Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,920,502 – 10,920,592 |
Length | 90 |
Max. P | 0.695060 |
Location | 10,920,502 – 10,920,592 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.91 |
Mean single sequence MFE | -30.25 |
Consensus MFE | -17.31 |
Energy contribution | -15.70 |
Covariance contribution | -1.61 |
Combinations/Pair | 1.39 |
Mean z-score | -2.13 |
Structure conservation index | 0.57 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695060 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10920502 90 - 20766785 GAAAGCUGAGAGCUAAGAGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUUCCUACUU----AGGUCCUGCCCCAAAUGUUAUUCAGACAAG ....(((((((((.....)))((.((...(((..((((......((....)).....)))----)..)))..))))........))))).)... ( -20.90) >DroPse_CAF1 32473 91 - 1 --GAAAUGGGAGUUGGCGUCUGG-GGGAUGGAAAUGAGGCAAAUGCCUCUGUUUCUGUAUGGCCAGGUCCUGCCCCAAAUGUUAUUCAGACAAG --....((((.((.((.((((((-...(((((((((((((....))))).))))))))....)))))))).))))))..((((.....)))).. ( -31.50) >DroEre_CAF1 33396 90 - 1 GGUGGCUGGGAACUGAGGGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUCCCUACUU----CGGUCCUGCCCCAAAUGUUAUUCAGACAAG ((.(((.(....)..((((((((((....(((...(((((....)))))..)))...)))----))))))))))))...((((.....)))).. ( -32.20) >DroYak_CAF1 34827 90 - 1 AAGGGCUGAGGGCUGAGGGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUUUCUACUU----GGGUCCUGCCCCAAAUGUUAUUCAGACAAG ......((.((((..((((((.(((...((((((((((((....))))).))))))))))----.))))))))))))..((((.....)))).. ( -30.20) >DroAna_CAF1 32501 90 - 1 CGGUGUUGAGGGUUGGGACUUGGGGGAAUGGAAAUGAGGUAAAUGCUUCUGUUCCUGCCC----AGGUCCUGCCCCAAAUGUUAUUCAGACAAG .........(((..((((((((((.(...((((..(((((....)))))..))))).)))----)))))))..)))...((((.....)))).. ( -35.20) >DroPer_CAF1 33119 91 - 1 --GAAAUGGGAGUUGGCGUCUGG-GGGAUGGAAAUGAGGCAAAUGCCUCUGUUUCUGUAUGGCCAGGUCCUGCCCCAAAUGUUAUUCAGACAAG --....((((.((.((.((((((-...(((((((((((((....))))).))))))))....)))))))).))))))..((((.....)))).. ( -31.50) >consensus __GAGCUGAGAGCUGAGGGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUUCCUACUU____AGGUCCUGCCCCAAAUGUUAUUCAGACAAG .........(((.(((.(..(((.((...(((...(((((....)))))....(((........))))))..)))))..).))))))....... (-17.31 = -15.70 + -1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:39 2006