Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,912,651 – 10,912,755 |
Length | 104 |
Max. P | 0.986764 |
Location | 10,912,651 – 10,912,755 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 73.02 |
Mean single sequence MFE | -24.49 |
Consensus MFE | -5.70 |
Energy contribution | -5.78 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -2.31 |
Structure conservation index | 0.23 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10912651 104 + 20766785 CC--UGUGUCAUGUUCACGUGGAAAAACUCAGCCCUUG--ACUUUAGCCUUUAUAGGGUCAAAAGCUGAUCAGAACAUAGGGUUAUUUAAUACAUUUUUUGACCAAUA .(--(((((((((....)))).......(((((..(((--((((((.......)))))))))..))))).....))))))(((((..............))))).... ( -27.74) >DroSec_CAF1 25615 82 + 1 CC--UGUGUCAUGUGCACGGUUAAAAACUCAGCCCUUG--CCUUUAGCCUUUAUAGGGUCAAAAGGCGAUCAG----------------------UUUUUGACCAAUA ..--.((((.....))))(((((((((((......(((--(((((.((((.....))))..))))))))..))----------------------))))))))).... ( -27.50) >DroSim_CAF1 27640 82 + 1 CC--UGUGUCAUGUGCACGGUUAAAAACUCAGCCCUUG--CCUUUAGCCUUUAUAGGGUCAAAAGGCGAUCAG----------------------UUUUUGACCAAUA ..--.((((.....))))(((((((((((......(((--(((((.((((.....))))..))))))))..))----------------------))))))))).... ( -27.50) >DroEre_CAF1 25463 94 + 1 CC--UGUGUCGUGUGCACGGGGAAAAACUCAGCUCUUACUCCUUCAGCCAUUAUUGGGUCAAAAGCUGAUCAGAACAAAGAGU------------CAUGUAAUAUAUA ((--(((((.....))))))).....((...((((((..((..(((((................)))))...))...))))))------------...))........ ( -20.39) >DroYak_CAF1 27045 86 + 1 ACGUUGUGUCAUGUGCACGGGAAAAAACUCGGCUCUUACUCCCUUUGCCUUUAUAGGGUUAAAGGCUAAUCAC----------------------UUUUUGAGCAAUA ..(((((.(((.(.((.((((......)))))).)...........(((((((......))))))).......----------------------....)))))))). ( -19.30) >consensus CC__UGUGUCAUGUGCACGGGGAAAAACUCAGCCCUUG__CCUUUAGCCUUUAUAGGGUCAAAAGCUGAUCAG______________________UUUUUGACCAAUA .....((((.....)))).......................(((..((((.....))))...)))........................................... ( -5.70 = -5.78 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:38 2006