Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,910,054 – 10,910,153 |
Length | 99 |
Max. P | 0.997223 |
Location | 10,910,054 – 10,910,153 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 76.79 |
Mean single sequence MFE | -21.27 |
Consensus MFE | -5.98 |
Energy contribution | -6.62 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -2.88 |
Structure conservation index | 0.28 |
SVM decision value | 2.82 |
SVM RNA-class probability | 0.997223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10910054 99 - 20766785 AGCUUUC--CAAAUUCAAAUGGAAACUGAAAUUGCGGGUAAAUCAGAGCCAAACCGCAUUU-----UCCAGUUUCCCAAAAAAUUACCACAUUAAAGGUUUUGGAG .....((--((((.......(((((((((((.(((((................))))).))-----).)))))))).........(((........))))))))). ( -27.49) >DroSec_CAF1 23097 100 - 1 AGCUUUCCCCAAAUUCAAAUGGAAACUGAAAUUGCGGGUAAAUCAAAGCCAAACCACAUUU-----UCCAGUUUCCCAAAA-AGUACCACAUAAAAGGUUUUUGAG ..............(((((.(((((((((((.((.((................)).)).))-----).)))))))).....-...(((........))).))))). ( -18.79) >DroSim_CAF1 24990 100 - 1 AGCAUUCCCCAAAUGCAAAUGGAAACUGAAAUUGCGGGUAAAUCAGAACCAAACCACAUUU-----UCCAGUUUCCCACAA-AGUACCACAUAAAAGGUUUUUGAG .(((((.....)))))....(((((((((((.((.((................)).)).))-----).))))))))..(((-((.(((........)))))))).. ( -24.09) >DroEre_CAF1 22925 101 - 1 AAUUU-U--CGAAUUCAAAUCGAAACUGAAAAUUACGCUAAAUCGGAU-CGAACCACAUUUUAGUUUUCAGGUUCCCAAAA-AGUGCCACAUAAAAGGUAUUAAAC ...((-(--(((.......))))))((((((.....((((((..((..-....))....))))))))))))..........-((((((........)))))).... ( -17.70) >DroYak_CAF1 24350 87 - 1 GACUUUC--CGAAUCCAAAUCGAAACUGAAAUUAAGGGGAA----------AACCACAUU------UUCAAUUUCCCAAAA-AGUACCACAUAAAAGGUACGAAAG ..(((((--............((((.(((((.....((...----------..))....)------)))).))))......-.(((((........)))))))))) ( -18.30) >consensus AGCUUUC__CAAAUUCAAAUGGAAACUGAAAUUGCGGGUAAAUCAGAGCCAAACCACAUUU_____UCCAGUUUCCCAAAA_AGUACCACAUAAAAGGUUUUAGAG ....................((((((((........................................)))))))).........(((........)))....... ( -5.98 = -6.62 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:37 2006