Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,908,694 – 10,908,791 |
Length | 97 |
Max. P | 0.999405 |
Location | 10,908,694 – 10,908,791 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 97.55 |
Mean single sequence MFE | -25.45 |
Consensus MFE | -24.08 |
Energy contribution | -23.76 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -2.36 |
Structure conservation index | 0.95 |
SVM decision value | 3.58 |
SVM RNA-class probability | 0.999405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10908694 97 + 20766785 GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGUCCUU ((.((--(((((......)))))))...))..........(((((((((((((((..((((...........)))).))).))))))....)))))).. ( -22.90) >DroSec_CAF1 21744 97 + 1 GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGCCCUU ((.((--(((((......)))))))...)).(((((.((((((((((.((.......(((....))).......))))))..))))))...)))))... ( -24.94) >DroSim_CAF1 23623 97 + 1 GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGCCCUU ((.((--(((((......)))))))...)).(((((.((((((((((.((.......(((....))).......))))))..))))))...)))))... ( -24.94) >DroEre_CAF1 21590 97 + 1 GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGCAUUUCCAUUGAAAAGCCCUU ((.((--(((((......)))))))...)).(((((.((((((.....((.......(((....))).......))......))))))...)))))... ( -24.84) >DroYak_CAF1 23021 99 + 1 GUUGUGUGUGUGUUGAUUUACAUAUUUUGCGGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGCCCUGAAUUUCCAUUGAAAAGCCCUU ((...(((((((......)))))))...))((((((.((((((((((.((.......(((....)))......)).))))..))))))...)))))).. ( -29.62) >consensus GUUGU__GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGCCCUU ..(((..((((((......))))))...)))(((((.((((((.....((.......(((....))).......))......))))))...)))))... (-24.08 = -23.76 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:36 2006