Locus 3187

Sequence ID 2R_DroMel_CAF1
Location 10,899,393 – 10,899,488
Length 95
Max. P 0.651882
window5245

overview

Window 5

Location 10,899,393 – 10,899,488
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 90.63
Mean single sequence MFE -29.50
Consensus MFE -22.02
Energy contribution -23.38
Covariance contribution 1.36
Combinations/Pair 1.14
Mean z-score -1.77
Structure conservation index 0.75
SVM decision value 0.25
SVM RNA-class probability 0.651882
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10899393 95 - 20766785
UUGGAUUUAUUGUUGGUAGUGCUAUUACUGCCAUUAGCCUGUUGACUCUUGAGCGCACUGCUGCUCUCGGCACUGCUGGUAGAGUUUUCCAGUUG
(((((........((((((((....))))))))..........((((((.....(((.(((((....))))).)))....)))))).)))))... ( -28.00)
>DroSec_CAF1 12230 95 - 1
UUGGAUUUACUGUUGGUAGCGCUACUACUGCCAUUAGUCUGUUGACUCUUGAGCGCACUGCUGCUCUCGGCACUGCUCGUAGAGUUUUCCAGUUG
(((((...((((.((((((........)))))).)))).....((((((((((((...(((((....))))).)))))).)))))).)))))... ( -32.00)
>DroSim_CAF1 14062 95 - 1
UUGGAUUUACUGUUGGUAGCGCUACUACUGCCAUUAGUCUGUUGGCUCUUGAGCGCACUGCUGCUCUCGGCACUGCUCGUAGAGUUUUCCAGUUG
(((((...((((.((((((........)))))).)))).....((((((((((((...(((((....))))).)))))).)))))).)))))... ( -31.50)
>DroEre_CAF1 12094 95 - 1
AGGGAGUUACUGUUGGUAACGUUACUACUGCCAUUUGUCUGGUGACUCUUAAGGGCACUGCUGCUCUCGCCACUGCUCGUAGAGUUUUCCAGUUG
.((..(((((.....)))))((....))..))......((((.((((((...(((((.((..((....)))).)))))..))))))..))))... ( -26.70)
>DroYak_CAF1 12824 95 - 1
UUGGAGUUACUAUUGGUAACGCUACUACUGCCAUUUGUCUGGUUACUCUUGAGAGCACUGCUGCUCUCGCCGCUGCUCGUAGAGUUUUCCAGUUG
.(((.(((((.....))))).)))..............((((..(((((...(((((..((.((....)).)))))))..)))))...))))... ( -29.30)
>consensus
UUGGAUUUACUGUUGGUAGCGCUACUACUGCCAUUAGUCUGUUGACUCUUGAGCGCACUGCUGCUCUCGGCACUGCUCGUAGAGUUUUCCAGUUG
.((((...((((.((((((........)))))).)))).....((((((...(.(((.(((((....))))).))).)..)))))).)))).... (-22.02 = -23.38 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:34 2006