Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,880,748 – 10,880,868 |
Length | 120 |
Max. P | 0.506417 |
Location | 10,880,748 – 10,880,868 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -47.27 |
Consensus MFE | -29.38 |
Energy contribution | -29.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.43 |
Mean z-score | -1.48 |
Structure conservation index | 0.62 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10880748 120 + 20766785 UGCCUCAAAGAGCAGCACAUAUGAGAUGCUGGGAAGCGCAGGAGGACAGCUCCGCCUCUAUGGCGGCGAGCUGCUGCUCUUUGUCCCGGAGCACGCCAUUGGAAAGCACGUCAAGAAGCA (((((((((((((((((((((.(((..(((....)))((.((((.....)))))))))))))((.....))))))))))))))....)).))).((..((((........))))...)). ( -41.60) >DroVir_CAF1 17492 120 + 1 CGCCUCGAAGAGCAGCAGCUACGAGCUGCUGGGCAGCAACGGCGGCCAGCUGCGUCUGUAUGGCGGCGAGCUGUUGCUCUUUGUGCCGGAGCUGGCCAUUGGCAAGCAUCUGAAGAAGCA .((..(((((((((((((((....(((((((.((((...((((.....))))...)))).))))))).))))))))))))))).))(((((((.(((...))).))).))))........ ( -59.60) >DroGri_CAF1 15576 120 + 1 CGCCUCGAAGAGCACCAGUUAUGAGCUGCUGGGCAGCAGUGGCGGCCAGUUGCGUUUGUAUAACGGUGAGCUGUUGCUCUUUGUGCCGGAGCUGGCGAUUGGGAAGCAUCUGAAGAAGCA .((.((..(((((.((((((....((..(((.....)))..)).(((((((.((...((((((....((((....)))).)))))))).)))))))))))))...)).)))...)).)). ( -48.50) >DroWil_CAF1 58128 120 + 1 UGCCUCGAAGAGCAUCAGUUAUGAGCUUCUAGGCAGCAAUGGCGGACAACUGCGUCUGUACAAUGGAGAACUGUUGCUUUUUGUACCCGAAAUGGCCAUCAGUAAGCACCUGAAAAAGCA (((((.((((..(((.....)))..)))).)))))((..((((((((......))))((((((.((((........))))))))))........))))((((.......))))....)). ( -34.80) >DroMoj_CAF1 23011 120 + 1 CGCCUCGAAGAGCAGCAGCUACGAGCUCCUGGGCAGCAACGGAGGCCAGCUGCGUCUGUACGGCGGCGAGCUGCUGCUGUUUGUGCCGGAGCUGGCGAUUGGCAAGCACGUGAAGAAGCA .(((.((((.((((((((((....(((.(((..(((..(((.((.....)).))))))..))).))).)))))))))).))))(((((....)))))...)))..((..........)). ( -51.00) >DroAna_CAF1 9306 120 + 1 UGCCACGAAGAGCAGUUGCUACGAGCUCCUGGGAAGUUCCGGAGGACAGCUGCGCCUCUACGGUGGAGAGCUGCUGCUCUUUGUGCCGGAGCACGCCAUCGGGAAGCACCUGAAGAAGCA .(((((((((((((((.(((.....((((.(((....))))))).....((.((((.....)))).))))).)))))))))))))..((......)).(((((.....)))))....)). ( -48.10) >consensus CGCCUCGAAGAGCAGCAGCUACGAGCUGCUGGGCAGCAACGGAGGACAGCUGCGUCUGUACGGCGGCGAGCUGCUGCUCUUUGUGCCGGAGCUGGCCAUUGGCAAGCACCUGAAGAAGCA .((..(((((((((((((((....(((.....(((((...........)))))(((.....)))))).)))))))))))))))...........((.........))..........)). (-29.38 = -29.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:31 2006