Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,869,595 – 10,869,707 |
Length | 112 |
Max. P | 0.576242 |
Location | 10,869,595 – 10,869,707 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.21 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -21.45 |
Energy contribution | -21.57 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.94 |
Structure conservation index | 0.74 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10869595 112 - 20766785 UACAGAUAGCUGUACAUAUGUACAUA-------UAUUCCGCAUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG ....((((..(((((....)))))..-------))))..((.......((......))....(((((((((((((......)))))))).)))))....)).((((((.....)))))) ( -27.80) >DroSim_CAF1 10498 109 - 1 UACUCAUA--UGUACAUAUGUAUAUA-------UUUU-UACUUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG ...(((((--(((((....)))))))-------)...-..........((......))))..(((((((((((((......)))))))).))))).......((((((.....)))))) ( -26.30) >DroEre_CAF1 11446 113 - 1 UGCUC------GUACAUGUGCAUAUACUCGUCGUAUUCCACAUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG .((((------((.((((((...((((.....))))..))))))))..((......))))..(((((((((((((......)))))))).)))))....)).((((((.....)))))) ( -32.30) >consensus UACUCAUA__UGUACAUAUGUAUAUA_______UAUUCCACAUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG ...........((((....)))).........................((......))....(((((((((((((......)))))))).))))).......((((((.....)))))) (-21.45 = -21.57 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:23 2006