Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,867,633 – 10,867,738 |
Length | 105 |
Max. P | 0.521700 |
Location | 10,867,633 – 10,867,738 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.19 |
Mean single sequence MFE | -27.24 |
Consensus MFE | -22.80 |
Energy contribution | -23.44 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.32 |
Structure conservation index | 0.84 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10867633 105 + 20766785 -AGCUGGCAUCAUGUGGCAGUAGUUUUGGCAACAUAAAUUAGGCCACG------GGCAUCAUUUGUUACAA-------CCGGACACAUUAGAACU-UUGCUAAUACGAUACAAAUGAUAA -.....((....((((((..((((((((....)).)))))).))))))------.))(((((((((.....-------.((.....(((((....-...))))).))..))))))))).. ( -26.30) >DroSec_CAF1 8160 105 + 1 -AGCUGGCAUCAUGUGGCAGUAGUUUUGGCAACAUAAAUUAGGCCACG------GGCAUCAUUUGUUAGAA-------CCGGACACAUUAGAACU-UUGCUAAUACGAUACAAAUGAUAA -.....((....((((((..((((((((....)).)))))).))))))------.))(((((((((..(..-------..(....)(((((....-...))))).)...))))))))).. ( -26.90) >DroSim_CAF1 8520 105 + 1 -AGCUGGCAUCAUGUGGCAGUAGUUUUGGCAACAUAAAUUAGGCCACG------GGCAUCAUUUGUUAGAA-------CCGGACACAUUAGAACU-UUGCUAAUACGAUACAAAUGAUAA -.....((....((((((..((((((((....)).)))))).))))))------.))(((((((((..(..-------..(....)(((((....-...))))).)...))))))))).. ( -26.90) >DroEre_CAF1 9497 105 + 1 -AGCUGGCAUCAUGUGGCAGCAGUUUUGGCAACAUAAAUUAGGCCACG------GGCAUCAUUUGUUACAA-------GCGGACACAUUAGAACU-UUGCUAAUACGAUACAGAUGAUAA -.....((....((((((...(((((((....)).)))))..))))))------.))(((((((((....(-------(((((...........)-)))))........))))))))).. ( -26.40) >DroAna_CAF1 20988 118 + 1 CGGCUGGCAUCAUAUGGCCG--GUUUUGGCAACACAAAUUAGGCCACGGACAUGGGCAUCAUUUGUUAGGAGGAGGAGUUGGACACAUUAGAACUUUUGCUAAUACGAUCCAAACGAUAA ((..(((.(((...(((((.--..((((......))))...))))).................((((((.(((((....((....))......))))).)))))).))))))..)).... ( -29.70) >consensus _AGCUGGCAUCAUGUGGCAGUAGUUUUGGCAACAUAAAUUAGGCCACG______GGCAUCAUUUGUUAGAA_______CCGGACACAUUAGAACU_UUGCUAAUACGAUACAAAUGAUAA ..(((.......((((((...(((((((....)).)))))..))))))......)))(((((((((..............(....)(((((........))))).....))))))))).. (-22.80 = -23.44 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:22 2006