Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,110,909 – 2,111,004 |
Length | 95 |
Max. P | 0.996868 |
Location | 2,110,909 – 2,111,004 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 94.09 |
Mean single sequence MFE | -19.94 |
Consensus MFE | -17.58 |
Energy contribution | -18.38 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.88 |
SVM decision value | 2.76 |
SVM RNA-class probability | 0.996868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2110909 95 + 20766785 CACUGCU-UUUUACAGCUUCCCCCAUCUGCUCCUCCGGAGUUGGGCAAACUGUGGACAGGCAUUGAAAGCAUCCCCUAUUCACACCCCUCUCCAAU ((.((((-((((((((.((..((((...(((((...)))))))))..))))))))).))))).))............................... ( -23.00) >DroSec_CAF1 89765 94 + 1 CACUGCU-UU-UCCAGCUUCCCCCAUCUGCUCCUCCGGAGUUGGGCAAACUGUGGACAGGCAUUGAAAGCAUCCCCUAUUCACACCCCUCUCCACU ....(((-..-...)))....((((...(((((...)))))))))......(((((.(((...((((((......)).))))....))).))))). ( -22.40) >DroSim_CAF1 92933 94 + 1 CACUGCU-UU-UCCAGCUUCCCCCAUCUGCUCCUCCGGAGUUGGGCAAACUGUGGACAGGCAUUGAAAGCAUCCCCUAUUCACACCCCUCUCCACU ....(((-..-...)))....((((...(((((...)))))))))......(((((.(((...((((((......)).))))....))).))))). ( -22.40) >DroEre_CAF1 88132 95 + 1 CACUGCUCUU-UCCAGCUUCCCCCAUCUGCUCCUCCGGAGUUGGGCAAACUGUGGACAACCAUUGAAAGCAUCCCCUAUUCACACCCCUCUCCACU ....(((...-...)))....((((...(((((...)))))))))......(((((.......((((((......)).))))........))))). ( -17.46) >DroYak_CAF1 91807 91 + 1 CACU----UU-UCCAGCUUCCCCCAUCUGCUCCUUCGGAGUUGGGCAAACUGUGGACAACAAUUGACAGCAUCCCCUAUUCACACCCCCCUCCACU ....----..-...(((...........))).....((((..(((.....((((((.......((....)).......)))))))))..))))... ( -14.44) >consensus CACUGCU_UU_UCCAGCUUCCCCCAUCUGCUCCUCCGGAGUUGGGCAAACUGUGGACAGGCAUUGAAAGCAUCCCCUAUUCACACCCCUCUCCACU ..............(((...........))).....((((..(((.....((((((.(((...((....))...))).)))))))))..))))... (-17.58 = -18.38 + 0.80)
Location | 2,110,909 – 2,111,004 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 94.09 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -26.68 |
Energy contribution | -26.88 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.71 |
Structure conservation index | 0.93 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2110909 95 - 20766785 AUUGGAGAGGGGUGUGAAUAGGGGAUGCUUUCAAUGCCUGUCCACAGUUUGCCCAACUCCGGAGGAGCAGAUGGGGGAAGCUGUAAAA-AGCAGUG ...(((.(((.((.((((.((......)))))))).))).)))(((((((.(((..((((...))))......))).)))))))....-....... ( -30.70) >DroSec_CAF1 89765 94 - 1 AGUGGAGAGGGGUGUGAAUAGGGGAUGCUUUCAAUGCCUGUCCACAGUUUGCCCAACUCCGGAGGAGCAGAUGGGGGAAGCUGGA-AA-AGCAGUG .(((((.(((.((.((((.((......)))))))).))).)))))..(((.((((.((((...))))....)))).)))(((...-..-))).... ( -31.50) >DroSim_CAF1 92933 94 - 1 AGUGGAGAGGGGUGUGAAUAGGGGAUGCUUUCAAUGCCUGUCCACAGUUUGCCCAACUCCGGAGGAGCAGAUGGGGGAAGCUGGA-AA-AGCAGUG .(((((.(((.((.((((.((......)))))))).))).)))))..(((.((((.((((...))))....)))).)))(((...-..-))).... ( -31.50) >DroEre_CAF1 88132 95 - 1 AGUGGAGAGGGGUGUGAAUAGGGGAUGCUUUCAAUGGUUGUCCACAGUUUGCCCAACUCCGGAGGAGCAGAUGGGGGAAGCUGGA-AAGAGCAGUG .(((((.((..((.((((.((......))))))))..)).)))))..(((.((((.((((...))))....)))).)))(((...-...))).... ( -23.80) >DroYak_CAF1 91807 91 - 1 AGUGGAGGGGGGUGUGAAUAGGGGAUGCUGUCAAUUGUUGUCCACAGUUUGCCCAACUCCGAAGGAGCAGAUGGGGGAAGCUGGA-AA----AGUG .(((((.((.(((.(((.(((......))))))))).)).)))))(((((.(((..((((...))))......))).)))))...-..----.... ( -26.50) >consensus AGUGGAGAGGGGUGUGAAUAGGGGAUGCUUUCAAUGCCUGUCCACAGUUUGCCCAACUCCGGAGGAGCAGAUGGGGGAAGCUGGA_AA_AGCAGUG ..((((.(((.((.((((.((......)))))))).))).))))((((((.(((..((((...))))......))).))))))............. (-26.68 = -26.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:19 2006