Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,855,233 – 10,855,347 |
Length | 114 |
Max. P | 0.831530 |
Location | 10,855,233 – 10,855,347 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 98.54 |
Mean single sequence MFE | -42.90 |
Consensus MFE | -42.28 |
Energy contribution | -41.90 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -2.02 |
Structure conservation index | 0.99 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10855233 114 + 20766785 CCGCCAAAGGAUUCAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGUCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU ((......)).......((((((((((.....((.(((....)))..)).((((.((.(..(....)..).))..))))..))))))....)))).(((((....))))).... ( -40.60) >DroSec_CAF1 4301 114 + 1 CCGCCAAAGGAUUUAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU ((......)).......((((((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..))))))....)))).(((((....))))).... ( -43.80) >DroSim_CAF1 4654 114 + 1 CCGCCAAAGGAUUUAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU ((......)).......((((((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..))))))....)))).(((((....))))).... ( -43.80) >DroEre_CAF1 5612 114 + 1 CCGCCAAAGGAUUCAAAGUAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU .(((....(((((.......(((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..)))))))))))))))(((((....))))).... ( -43.41) >consensus CCGCCAAAGGAUUCAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU ((......)).......((((((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..))))))....)))).(((((....))))).... (-42.28 = -41.90 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:20 2006