Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,852,053 – 10,852,147 |
Length | 94 |
Max. P | 0.836340 |
Location | 10,852,053 – 10,852,147 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -20.35 |
Consensus MFE | -14.00 |
Energy contribution | -14.88 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.90 |
Structure conservation index | 0.69 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.836340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10852053 94 + 20766785 CUCAAACGAGUGCUCGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACCUCCCAGUCCCA----CUCCCACUUCCACUUCCAGU-CCCACU .......(((((....(((.((...((((.....))))..))))).....((((........))))))----))).................-...... ( -19.60) >DroSec_CAF1 1108 80 + 1 CUUAAACGAGUGCUCGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACCUCCCAGUCCCA----CUCCCAAUCCCG--------------- .......(((((....(((.((...((((.....))))..))))).....((((........))))))----))).........--------------- ( -19.60) >DroEre_CAF1 1173 85 + 1 CUAACACCAGUGCUCGGAGCGAUUUUGCCAGUGUGACAUUUCCUCAUUACGGACACGUCCCAGUCCCA----GUCCCACUCC------CAGU-CCC--- .........(..((.((((.(...(((..(.((.(((...(((.......)))...))).)).)..))----)...).))))------.)).-.).--- ( -16.00) >DroYak_CAF1 1174 90 + 1 CUAAAACGAGUGCCAGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACGUCCCACUCCCAUGUCGUUCCACUCC------CAAACCCC--- .......((((....((((((((..((..((((.(((...(((.......)))...))).))))..)).)))))))))))).------........--- ( -26.20) >consensus CUAAAACGAGUGCUCGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACCUCCCAGUCCCA____CUCCCACUCC______CAGU_CCC___ .......(((((....(((.((...((((.....))))..))))).....((((........))))..........))))).................. (-14.00 = -14.88 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:19 2006