Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,838,235 – 10,838,328 |
Length | 93 |
Max. P | 0.992292 |
Location | 10,838,235 – 10,838,328 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 96.02 |
Mean single sequence MFE | -19.98 |
Consensus MFE | -18.68 |
Energy contribution | -18.52 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.76 |
Structure conservation index | 0.93 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10838235 93 + 20766785 CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGGAAGACCUCGCCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU .(((((((.(((.(((...((.....))...))).(((((((((((.(((...........)))...))))))))))).)))..))))))).. ( -18.50) >DroSec_CAF1 45806 93 + 1 CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGACUUCGUCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGAUUUAAU .(((((((.(((.(((...((.....))...))).(((((((((((((((...........))))..))))))))))).)))..))))))).. ( -21.60) >DroSim_CAF1 46033 93 + 1 CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGACUUCGUCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU .(((((((.(((.(((...((.....))...))).(((((((((((((((...........))))..))))))))))).)))..))))))).. ( -21.00) >DroEre_CAF1 51220 93 + 1 CUGAAUCUCGCCCAGCUAUUCUUACCGAUAUGCUUAUUUGAAAGAAGUCGUCAACUCUACUUGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU .(((((((.(((.(((...((.....))...))).((((((((((.....((((......))))....)))))))))).)))..))))))).. ( -19.60) >DroYak_CAF1 51657 93 + 1 CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGAGCUCGUCAACUCUACUUGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU .(((((((.(((.(((...((.....))...))).((((((((((.(...((((......))))...))))))))))).)))..))))))).. ( -19.20) >consensus CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGACCUCGUCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU .(((((((.(((.(((...((.....))...))).(((((((((((.(((...........)))...))))))))))).)))..))))))).. (-18.68 = -18.52 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:16 2006