| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,829,871 – 10,829,988 |
| Length | 117 |
| Max. P | 0.844353 |
| Location | 10,829,871 – 10,829,988 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.92 |
| Mean single sequence MFE | -41.40 |
| Consensus MFE | -16.08 |
| Energy contribution | -16.22 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10829871 117 + 20766785 GCAGUC---GCCUGCUACCAAGGAAGCCAUAUUAGAGGCUUUACUGGAGCAGGUGAAGCGCAAGGAAGCCCGCUGCAAGCAGGAUAUGAUUUUCAUAUUCAUUGCCCUUGCACGGGGAAU ((..((---(((((((.(((..((((((........))))))..))))))))))))...)).......((((.(((((((((((((((.....)))))))..)))..))))))))).... ( -53.00) >DroVir_CAF1 46411 120 + 1 CAAGGCGACGGCUGGCUCAAAGCGCGCCAUUAUCGAGGAGCUGCUGGCGCAGAUUAAGCGCAAGGAGGCGCGCUGCAAACAGGACAUGAUCUUCAUAUUCAUUAUACUGGCACGCGGCAU ...((((...(((.......))).))))...........(((((..((((((.....((((......)))).))))...(((...((((.........))))....)))))..))))).. ( -38.80) >DroWil_CAF1 58876 117 + 1 CAAAGU---GGCCUCUUCGAAAAAAGGUAUAAUCGAAGAGCUUCUUGAGCAGAUCAAGCGUAAAGAAGCACGUUCCAAACAGGAUAUGAUCCUCAUAUUCAUUGUACUUGCACGUGGCAU ......---.((((((((((............)))))))(((((((..((.......))...)))))))((((..(((((((((((((.....)))))))..)))..))).))))))).. ( -32.80) >DroYak_CAF1 42997 117 + 1 GCAGCC---GACAGCUACCAAGAAGGCCAUAUUGGAGGCUUUACUGGAGCAGAUCAAGCGCAAGGAAGCCCGCUGCAAGCAGGAUAUGAUCUUCAUAUUCGUUGCUCUUGCACGGGGAAU ((.((.---(((.(((.(((..((((((........))))))..)))))).).))..)))).......((((.(((((((((((((((.....)))))))..))))..)))))))).... ( -40.50) >DroMoj_CAF1 59041 120 + 1 GCACGAAAAGGCUGGCUCGAAGCGUGCCAUAAUCGAGCAGCUGCUGGCGCUGAUAAAGCGCAAGGAAGCCCGCUGCAAACAGGAUAUGAUCUUCAUAUUCAUUGUACUUGCACGCGGCAU ((.(((...(((..((.....))..)))....))).)).(((.((.(((((.....))))).))..)))(((((((((((((((((((.....)))))))..)))..))))).))))... ( -42.80) >DroAna_CAF1 37456 117 + 1 GCAGUC---GGUCUCCAGCAAAAAGCAGGUCUUAGAGGCCCUGCUGGAGCAGAUCAAGCGUAAGGAAGCCCGCUGCAAGCAGGAUAUGAUCUUCAUAUUCAUUGUCCUUGCCCGGGGAAU (((((.---((..(((.......((((((.((....)).))))))...((.......))....)))..)).))))).....(((((((.....)))))))....(((((....))))).. ( -40.50) >consensus GCAGGC___GGCUGCCACCAAGAAAGCCAUAAUCGAGGAGCUGCUGGAGCAGAUCAAGCGCAAGGAAGCCCGCUGCAAACAGGAUAUGAUCUUCAUAUUCAUUGUACUUGCACGGGGAAU ................................................((.......)).........((((.(((((((((((((((.....)))))))..)))..))))))))).... (-16.08 = -16.22 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:09 2006