Locus 3168

Sequence ID 2R_DroMel_CAF1
Location 10,824,273 – 10,824,371
Length 98
Max. P 0.823655
window5215

overview

Window 5

Location 10,824,273 – 10,824,371
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 93.88
Mean single sequence MFE -18.93
Consensus MFE -17.83
Energy contribution -16.73
Covariance contribution -1.10
Combinations/Pair 1.16
Mean z-score -1.91
Structure conservation index 0.94
SVM decision value 0.69
SVM RNA-class probability 0.823655
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10824273 98 + 20766785
UAUUUUCUCUCUCAGAAAUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAAUUAACAGUCCAAUGUUAAAAAUUAACAGCUGUUGCAAACAUA
..............(((((.(((((((......))))))))))))....((((....(((((((....(((((.....))))))))))))...)))). ( -20.20)
>DroSec_CAF1 31578 98 + 1
UGUUUCCUCUCUCAGAAGUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAAUUAACAGUACCAUGUUAAAAAUUAACAGCUGUUGCAAAUAUA
..............(((...(((((((......)))))))..)))((((.(((.((((((((......)))))...))).)))....))))....... ( -17.80)
>DroSim_CAF1 31958 96 + 1
UGUUUCCUCUCUCAGAAGUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAAUUAACAGUACCAUGUUAAAAAUUAACAGCUGUUGCAAGCA--
.((((.........(((...(((((((......)))))))..)))((((.(((.((((((((......)))))...))).)))....)))))))).-- ( -18.80)
>consensus
UGUUUCCUCUCUCAGAAGUAUUCCAAUGUUCCAAUUGGAAGUUUCGCAAAUGUAAAUUAACAGUACCAUGUUAAAAAUUAACAGCUGUUGCAAACAUA
((((((........))))))(((((((......)))))))((((.((((.(((.((((((((......)))))...))).)))....))))))))... (-17.83 = -16.73 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:05 2006