Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,819,235 – 10,819,351 |
Length | 116 |
Max. P | 0.997602 |
Location | 10,819,235 – 10,819,351 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -20.70 |
Energy contribution | -21.02 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.99 |
Structure conservation index | 0.92 |
SVM decision value | 2.89 |
SVM RNA-class probability | 0.997602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10819235 116 + 20766785 AACGCGAGUCAAAAACCUUUUGGAUAAAAACAGUUUAAAGUGGCAGCCGCCCGCUGUCAAUAAAGCAGAUUAAUUGCAAAUAAACUGAUUCACUCUUAAGCCAUAAUAAAUUAAAU .....((((......((....)).......(((((((...(((((((.....))))))).....((((.....))))...)))))))....))))..................... ( -23.60) >DroSec_CAF1 26629 116 + 1 AACGCGAGUCAAAAACCUUUUGGAUAAAAACAGUUUAAAGUGGCAGCCGCCCGCUGUCAGUAAAGCAAAUUAAUUGCAAAUAAACUGAUUCACUCUUAAGCCAUAAUAAAUUAAAU .....((((......((....)).......(((((((.(.(((((((.....))))))).)...((((.....))))...)))))))....))))..................... ( -24.80) >DroSim_CAF1 26857 116 + 1 AACGCGAGUCAAAAACCUUUUGGAUAAAAACAGUUUAAAGUGACAGCCGCCCGCUGUCAAUAAAGCAGAUUAAUUGCAAAUAAACCGAUUCACUCUUAAGCCAUAAUAAAUUAAAU .....(((((.....((....)).........(((((...(((((((.....))))))).....((((.....))))...))))).)))))......................... ( -22.10) >DroEre_CAF1 31512 115 + 1 AACGCGAGUCAAAAACCUUUUGGAUAAAAACAGUUUCAAGUGGAGGCAGCCCGCUGUCAAUAAAGCAGAUU-AUUGCAAAUAAACUGAUUUACUCUUAAGCCAUAAUAAAUGAUAU .....((((.(((..((....)).......((((((........(((((....)))))......((((...-.))))....)))))).)))))))..................... ( -18.90) >DroYak_CAF1 32675 116 + 1 AACGCGAGUCAAAAACCUUUUGGAUAAAAACCGUUUAAAGUGGCAGCAGCCCGCUGUCAAUAAAGCAGAUUAAUUGCAAAUAAACUGAUUCACUCUUAAGCCAUAAUAAAUUAAGU .....((((((....((....)).........(((((...(((((((.....))))))).....((((.....))))...)))))))))))...(((((...........))))). ( -23.50) >consensus AACGCGAGUCAAAAACCUUUUGGAUAAAAACAGUUUAAAGUGGCAGCCGCCCGCUGUCAAUAAAGCAGAUUAAUUGCAAAUAAACUGAUUCACUCUUAAGCCAUAAUAAAUUAAAU .....((((......((....)).......(((((((...(((((((.....))))))).....((((.....))))...)))))))....))))..................... (-20.70 = -21.02 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:03 2006