Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,809,978 – 10,810,071 |
Length | 93 |
Max. P | 0.998202 |
Location | 10,809,978 – 10,810,071 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 90.24 |
Mean single sequence MFE | -23.33 |
Consensus MFE | -20.65 |
Energy contribution | -19.69 |
Covariance contribution | -0.96 |
Combinations/Pair | 1.24 |
Mean z-score | -2.32 |
Structure conservation index | 0.89 |
SVM decision value | 3.03 |
SVM RNA-class probability | 0.998202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10809978 93 - 20766785 CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUUUACC--AAAAAAAAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU ..........(((((..((((.(((((((((....)).....(((((((....((--((........))))))))))).)))))))))))))))) ( -23.30) >DroSec_CAF1 17419 91 - 1 CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUCUACU--AAAA--AAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU ..........(((((..((((.(((((((((....)).....(((((((((....--....--......))))))))).)))))))))))))))) ( -24.64) >DroSim_CAF1 17597 92 - 1 CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUCUACU--AAAA-AAAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU ..........(((((..((((.(((((((((....)).....(((((((((....--....-.......))))))))).)))))))))))))))) ( -24.56) >DroEre_CAF1 22539 92 - 1 CAGUUGGUCCGCCUAAAAGUCAUUUUGGCGGAAAUUCAUAUGCGUUUUCCCUUCU--AAAA-UAAAAAUGGGAAAGCAAGUUAAGAGGCUUAGAU ..(....((((((.((((....))))))))))....)......((((((((....--....-.......))))))))(((((....))))).... ( -24.36) >DroYak_CAF1 18460 94 - 1 CAUUUGGUUCGCCCAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUUUUUUCCUAAAAA-AAAAAACGGGAAAGCAAGUUAAGAGGCUCAGAU ..(((((.....)))))((((.(((((((((....))...(.(((((((((((.....)))-)))))))).).......)))))))))))..... ( -19.80) >consensus CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUCUACU__AAAA_AAAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU (((.(((((((((.((((....))))))))))...))).))).((((((((..................))))))))(((((....))))).... (-20.65 = -19.69 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:01 2006