| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,807,105 – 10,807,218 |
| Length | 113 |
| Max. P | 0.590653 |
| Location | 10,807,105 – 10,807,218 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 90.11 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -19.36 |
| Energy contribution | -18.92 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10807105 113 - 20766785 UAGGCCUGUUCCUGUUUUCACUUUUGCCAACAUUUUGCUAAAGUGAACUGUAUUAGGAUUUAUUACAUUGUUUUCGAUUAUCAUUCAUUAGAGGUAAAAUAGUUUUCGGCUAU ..((((.....(((((((.(((((((...(((.((..(....)..)).)))....(((..((......))..))).............)))))))))))))).....)))).. ( -19.70) >DroSec_CAF1 14517 110 - 1 UAGGCCUGUUCCUGUUUUCACUUUUGCCAACAUUUUGCUAAAGUGAACUGUAUUGGGAUUAACUACAUUGUUUUCGAUUAUC---CAUUAGAGGUAAAAUAGUUUUGGGCUAU ..((((((...(((((((.(((((((((((((.((..(....)..)).)))..)))((..(((......))).)).......---...))))))))))))))...)))))).. ( -24.90) >DroSim_CAF1 14684 110 - 1 UAGGCCUGUUCCUGUUUUCACUUUUGCCAACAUUUUGCUAAAGUGAACUGUAUUGGGAUUAACUACAUUGUUUUCGAUUAUC---CAUUAAAGGUAAACUAGUUUUGGGCUAU ..((((((((((.((.((((((((.((.........)).))))))))....)).))))).(((((..(((..((..((....---.))..))..)))..)))))..))))).. ( -22.20) >DroEre_CAF1 19600 109 - 1 UAGGUCUGUUCCUGUUUUCACUUUUGCCAACAUUUUGCAAAAGUGAACUGUAUUAGGAUUCACUACUUUGCUUUCGAUUGUC---UAUUAGAGGUACUAUAGUU-UCGGCUAU ..((((...(((((..(((((((((((.........)))))))))))......)))))...((((...((((((..((....---.))..))))))...)))).-..)))).. ( -26.30) >DroYak_CAF1 15153 110 - 1 UAGGUCUGUUCCAGUUUUCACUUUUGCCAACAUUUUGCAAAAGUGAAGUUUAUUAGGAUUCAUUACAUUGCUCUCGAUUGUC---UAUUAGAGGUAAUAUAGUUUUCGGCUAU ..((((...((((((((((((((((((.........))))))))))))...))).)))...((((.(((((.(((.......---.....)))))))).))))....)))).. ( -25.00) >consensus UAGGCCUGUUCCUGUUUUCACUUUUGCCAACAUUUUGCUAAAGUGAACUGUAUUAGGAUUAACUACAUUGUUUUCGAUUAUC___CAUUAGAGGUAAAAUAGUUUUCGGCUAU ..((((...(((((..((((((((.((.........)).))))))))......)))))...((((..(((((((..((........))..)))))))..))))....)))).. (-19.36 = -18.92 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:00 2006