Locus 3162

Sequence ID 2R_DroMel_CAF1
Location 10,803,240 – 10,803,354
Length 114
Max. P 0.850011
window5208

overview

Window 8

Location 10,803,240 – 10,803,354
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.65
Mean single sequence MFE -40.44
Consensus MFE -30.14
Energy contribution -31.14
Covariance contribution 1.00
Combinations/Pair 1.06
Mean z-score -2.10
Structure conservation index 0.75
SVM decision value 0.78
SVM RNA-class probability 0.850011
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10803240 114 + 20766785
UCGCAACUGCUGGUUGCACUGAGCAGGCAGUUGAAACAGCAUCCA----CUUCUACACU--GGCAAGUGGCAAUUGCAGGUGGUGGCCACAGGUGGCACUAUAAGCUCAGACACCCACAC
..(((((.....))))).((((((..(((((((.........(((----(((((.....--)).)))))))))))))..((((((.(((....)))))))))..)))))).......... ( -41.70)
>DroSec_CAF1 10763 116 + 1
UCGCAACUGCUGGUUGCACUGAGCAGGCAGUUGAAACAGCAUUCA----CUUCUACACUCAGGCAAGUGGCAAUUGCAGGUGGUGGCCACAGGUGGCACUAUAAGCUCAGACACCCACAC
..((((.(((((.((((.(((((..((.(((.(((......))))----)).))...))))))))).))))).))))..((((((((((....)))).((........)).)).)))).. ( -39.60)
>DroSim_CAF1 10854 116 + 1
UCGCAACUGCUGGUUGCACUGAGCAGGCAGUUGAAACAGCAUUCA----CUGCUACACUCAGGCAAGUGGCAAUUGCAGGUGGUGGCCACAGGUGGCACUAUAAGCUCAGACACCCACAC
..((((.(((((.((((.(((((..((((((.(((......))))----)))))...))))))))).))))).))))..((((((((((....)))).((........)).)).)))).. ( -46.20)
>DroEre_CAF1 12166 114 + 1
UUGCAACUGCCUGCUGCACCGAACAGGCAGUUGAACCACCAUCCA----GAUCUGCAUUC--GCAAGUGGCAACUGCAGGUGGUGGCCACAGGUGGCACUAUAAGCUCAGACACCCACAC
...((((((((((..........))))))))))..((((((((((----(...(((...(--....)..))).)))..)))))))).....((((................))))..... ( -39.59)
>DroYak_CAF1 11080 118 + 1
UUGCAAGUGCUGGUUGCACUGAACAGGCAGUUGAAACACCAGCCACCAUGAAAUACACUC--GCAAGUGGCAACUGCAGGCGGUGGCCACAGGUGCCACUAUAAGCUCAGACACCCACGC
.(((.(((((.....)))))...((((..((((......))))..)).))..........--)))(((((((.(((..(((....))).))).))))))).................... ( -35.10)
>consensus
UCGCAACUGCUGGUUGCACUGAGCAGGCAGUUGAAACAGCAUCCA____CUUCUACACUC_GGCAAGUGGCAAUUGCAGGUGGUGGCCACAGGUGGCACUAUAAGCUCAGACACCCACAC
..(((((.....))))).((((((..(((((((......................((((......)))).)))))))..((((((.(((....)))))))))..)))))).......... (-30.14 = -31.14 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:58 2006