Locus 3160

Sequence ID	2R_DroMel_CAF1
Location	10,791,686 – 10,791,788
Length	102
Max. P	0.964590

overview

Window 6

Location	10,791,686 – 10,791,788
Length	102
Sequences	6
Columns	119
Reading direction	reverse
Mean pairwise identity	75.36
Mean single sequence MFE	-30.40
Consensus MFE	-10.92
Energy contribution	-13.20
Covariance contribution	2.28
Combinations/Pair	1.24
Mean z-score	-2.79
Structure conservation index	0.36
SVM decision value	1.57
SVM RNA-class probability	0.964590
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10791686 102 - 20766785
UUAAUUAUGCAGCAUUAAUAUU-UU-GCCAGCAAGGCGAA---AA-CGCGGU--GGCUGCUUAAAUUCAGUUAACGCCGCUGCUCCAACGACCACAAUGCUG--------UUUAAUAU-
...((((.((((((((....((-((-(((.....))))))---).-.(((((--(((.(((.......)))....))))))))............)))))))--------).))))..- ( -34.40)
>DroVir_CAF1 3016 104 - 1
AUAAUUAUUUCUCGUUAACAUU-UUGGCCAGCGAGGCGCA---AAAUGC-----UGCGGCUUAAAUUUAGUUAACGCGGCUUUUACG---GUCGCU-UUCUGUGUG--AAUUUAAUAUA
...((((.(((.((((((((((-((((((.....))).))---))))((-----....)).........))))))((((((.....)---))))).-......).)--))..))))... ( -25.80)
>DroEre_CAF1 2298 101 - 1
UUAAUUAUGCAGCAUUAAUAUU--U-GCCAGCAAGGCGAA---AA-CGCGGU--GGCUGCUUAAAUUCAGUUAACGCCGCUGCUCCGCCGACCACAAUGCUG--------UUUAAUAU-
...((((.((((((((....((--(-(((.....))))))---..-.(((((--(((.(((.......)))....))))))))............)))))))--------).))))..- ( -33.50)
>DroYak_CAF1 2875 104 - 1
UUAAUUAUGCAGCAUUAAUAUU-UU-GCCAGCAAGGCGAA---AA-CGCGGUAGGGCUGCUUAAAUUCAGUUAACGGCGCCGCUCCGUCGACCACAAUGCUG--------UUUAAUAU-
...((((.((((((((....((-((-(((.....))))))---).-(((((..((((((.((((......)))))))).))...))).)).....)))))))--------).))))..- ( -34.80)
>DroMoj_CAF1 3653 107 - 1
AUAAUUAUUCGGCAUUAACAUUUUUGGCCAGCGAGGCAAA---AAACGC-----AGCGGCUUAAAUUUAGUUAACGCGGCUUUUGAG---GUCGCU-UUGUGUGUAGAAAUUUAAUAAA
.......(((.((((((((..(((.((((.((...((...---....))-----.)))))).)))....))))..((((((.....)---))))).-....)))).))).......... ( -23.70)
>DroAna_CAF1 2360 102 - 1
UUAAUUAUGCAGCAUUAAUAUU-UU-GCCGGCAAGGCGAAAAAAA-CCCGGU--GGCUGCUUAAAUUUAGUUAACGCCG---CUCCAGCGACCACAAUGCUG--------UUUAAUAU-
...((((.((((((((....((-((-(((.....)))))))....-...(((--(((.(((.......)))....)))(---(....)).)))..)))))))--------).))))..- ( -30.20)
>consensus
UUAAUUAUGCAGCAUUAAUAUU_UU_GCCAGCAAGGCGAA___AA_CGCGGU__GGCUGCUUAAAUUCAGUUAACGCCGCUGCUCCG_CGACCACAAUGCUG________UUUAAUAU_
.........(((((((..........(((.....)))............((...(((.((((((......)))).)).)))...)).........)))))))................. (-10.92 = -13.20 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:56 2006