Locus 316

Sequence ID 2R_DroMel_CAF1
Location 2,077,913 – 2,078,009
Length 96
Max. P 0.654949
window641

overview

Window 1

Location 2,077,913 – 2,078,009
Length 96
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 92.58
Mean single sequence MFE -32.48
Consensus MFE -31.20
Energy contribution -30.76
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -1.10
Structure conservation index 0.96
SVM decision value 0.25
SVM RNA-class probability 0.654949
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2077913 96 - 20766785
C------AGCGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA
.------.(((.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).)). ( -35.20)
>DroSec_CAF1 62422 96 - 1
C------AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA
.------...(.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).... ( -32.60)
>DroSim_CAF1 65050 96 - 1
C------AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA
.------...(.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).... ( -32.60)
>DroEre_CAF1 60283 96 - 1
C------AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGCGCGCAAGGGGAUUCCGAAUGGACCAGGGUUGCCACCAUCCCACCA
.------...(.(((....((((....))))..(((((((((.((((((......))))))....)))))))))..))).).(((.((....)).))).... ( -33.30)
>DroYak_CAF1 64207 102 - 1
CACAGUCACCGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGCGCCGUUCAGCGUGCAAAGGGAUUUUGAACGGACCAGGUCUGCCACCAUCCCAGCA
....(.(((((((((....((((....))))....))))..))))))((((.....)).))...(((((..((..(((((...))))).))..))))).... ( -28.70)
>consensus
C______AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA
..........(.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).... (-31.20 = -30.76 +  -0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:15 2006