Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,077,913 – 2,078,009 |
Length | 96 |
Max. P | 0.654949 |
Location | 2,077,913 – 2,078,009 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -32.48 |
Consensus MFE | -31.20 |
Energy contribution | -30.76 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.10 |
Structure conservation index | 0.96 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2077913 96 - 20766785 C------AGCGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA .------.(((.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).)). ( -35.20) >DroSec_CAF1 62422 96 - 1 C------AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA .------...(.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).... ( -32.60) >DroSim_CAF1 65050 96 - 1 C------AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA .------...(.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).... ( -32.60) >DroEre_CAF1 60283 96 - 1 C------AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGCGCGCAAGGGGAUUCCGAAUGGACCAGGGUUGCCACCAUCCCACCA .------...(.(((....((((....))))..(((((((((.((((((......))))))....)))))))))..))).).(((.((....)).))).... ( -33.30) >DroYak_CAF1 64207 102 - 1 CACAGUCACCGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGCGCCGUUCAGCGUGCAAAGGGAUUUUGAACGGACCAGGUCUGCCACCAUCCCAGCA ....(.(((((((((....((((....))))....))))..))))))((((.....)).))...(((((..((..(((((...))))).))..))))).... ( -28.70) >consensus C______AACGUUCCUGCCCGGAAAAAUCUGAAUCGGAAUCCGGUGUGCCGUUCAGUGCGCAAAGGGAUUCCGAACGGACCAGGGUUGCCACCAUCCCAGCA ..........(.(((....((((....))))..(((((((((..((((((.....).)))))...)))))))))..))).).(((.((....)).))).... (-31.20 = -30.76 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:15 2006