Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,781,470 – 10,781,571 |
Length | 101 |
Max. P | 0.888942 |
Location | 10,781,470 – 10,781,571 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 99.21 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -23.86 |
Energy contribution | -24.06 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.96 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10781470 101 + 20766785 AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU ...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70) >DroSec_CAF1 17456 101 + 1 AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU ...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70) >DroSim_CAF1 17770 101 + 1 AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU ...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70) >DroEre_CAF1 17362 101 + 1 AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU ...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70) >DroYak_CAF1 18853 101 + 1 AUUGGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCUGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU .((((((((..............(((((.......)))))..((((.((((((((.(((((........)))))))))..))))))))..)).)))))).. ( -25.30) >consensus AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU ...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... (-23.86 = -24.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:52 2006