Locus 3156

Sequence ID 2R_DroMel_CAF1
Location 10,771,392 – 10,771,494
Length 102
Max. P 0.571085
window5201

overview

Window 1

Location 10,771,392 – 10,771,494
Length 102
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.04
Mean single sequence MFE -26.84
Consensus MFE -20.70
Energy contribution -21.28
Covariance contribution 0.58
Combinations/Pair 1.19
Mean z-score -1.34
Structure conservation index 0.77
SVM decision value 0.07
SVM RNA-class probability 0.571085
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10771392 102 - 20766785
ACAUACAGUAUU-UAUCAAUGAUUUAUUGCUUCUCACCCGCUGGCAUCGAUUUCGGUGAACUCCUUCAGACCAAUCACGUUGGUCUGCCGGUUGUCCGUGGGA
.....(((((..-.(((...))).))))).......(((((.(((((((....))))).((.((..(((((((((...)))))))))..))..))))))))). ( -29.80)
>DroSec_CAF1 7387 102 - 1
ACAUACAGUAGU-UAUCAAUGCUUUAUUGCUUCUCACCCGCUAGCAUCGAUUUCGGUGAACUCCUUCAGACCAAUCACAUUGGUCUGCCUGUUGUCCGUGGGA
..(((.((((..-......)))).))).........(((((...(((((....)))))(((.....(((((((((...)))))))))...)))....))))). ( -27.00)
>DroSim_CAF1 7716 102 - 1
ACAUACAGUAGU-UAUCAAUGCUUUAUUGCUUCUCACCCGCUGGCAUCGAUUUCGGUGAACUCCUUCAGACCAAUCACGUUGGUCUGCCUGUUGUCCGUGGGA
..(((.((((..-......)))).))).........(((((.(((((((....)))))(((.....(((((((((...)))))))))...)))..))))))). ( -28.20)
>DroEre_CAF1 7156 98 - 1
----AAAUUAGU-UUCCAAUGCUUUAUUGCUGCUCACCCGGUGGCAUCGAUUUGUGUGAACUCCUUCAGACCGAUCACGUUGGUCUGCUUAUUGUCCGUGGGA
----.(((.(((-..((((((......(((..((.....))..)))..((((.((.((((....)))).)).)))).))))))...))).))).......... ( -24.20)
>DroYak_CAF1 7346 98 - 1
----AAGGUAGU-UAUCAAUGCCCUAUUGCUACUCACCCGCUGGCAUCGAUUUCGGUGAACUCCUUCAGACCGAUCACAUUGGUCUGCUUGUUGUCCGUGGGA
----..((((((-...............))))))..(((((.((((.(((....((......))..(((((((((...))))))))).))).)))).))))). ( -30.16)
>DroAna_CAF1 21032 103 - 1
AAACGUAUUACUUUAAGGAUUAUUUUGUAAGUCUUACCCCGUGGCAUCGAUCUCCGUAAACUCCUUCAAGCUAAUGACAUUGGUCUGUUUGUUGUCCAUGGGA
....(((..((((...(((....)))..))))..)))(((((((((.((.....))..........(((((....(((....))).))))).)).))))))). ( -21.70)
>consensus
ACAUACAGUAGU_UAUCAAUGCUUUAUUGCUUCUCACCCGCUGGCAUCGAUUUCGGUGAACUCCUUCAGACCAAUCACAUUGGUCUGCCUGUUGUCCGUGGGA
....................................(((((.(((((((....)))).........(((((((((...)))))))))......))).))))). (-20.70 = -21.28 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:51 2006