Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,771,030 – 10,771,134 |
Length | 104 |
Max. P | 0.759374 |
Location | 10,771,030 – 10,771,134 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 78.94 |
Mean single sequence MFE | -19.33 |
Consensus MFE | -11.70 |
Energy contribution | -11.54 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.61 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10771030 104 + 20766785 UUACAUUA------UUAGCACACAAUUUUACAUCACAACUA-----UAUACAGUGUUAAAUUGUUCAUCUCCACAGCCCCACUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU ......((------(..(((((((((((.((((........-----......)))).)))))))...........((((............)))).))))..))).......... ( -19.74) >DroSec_CAF1 7020 109 + 1 UACUAUUA------UCAGCACACAACUUUACAUCACAACUUUGACUUAUACAGUGUUACAUUUUUCAUCUCCACAGCCCCACAUACAUUUUGGGCAGUGCCGAUACACUGCGCCU ........------...((.............(((......)))......((((((..........(((..(((.((((............)))).)))..))))))))).)).. ( -16.70) >DroSim_CAF1 7050 109 + 1 UACGAUUA------UUAGCACAAAACUUUACAGCACAACUUUCACUUAUACAGUGUUACAUUUUUCAUCUCCACAGCCCCACAUACAUUUUGGGCAGUGCCGAUACACUGCGCCU ......((------(..((((..........(((((................)))))..................((((............)))).))))..))).......... ( -16.89) >DroEre_CAF1 6784 114 + 1 CACAAUUAUACUCGUAAGCACCCCAAUUUACAUCAUACCUUUGACUUAUAAAGCGUUCCAUU-UUCGUUUCCACAGCCCCACUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU .............(((((..............(((......)))......(((((.......-..)))))...........))))).....((((((((......)))))).)). ( -18.30) >DroYak_CAF1 6987 101 + 1 -------------UUAAUCGCAGUAAUUUAGCGUAGAACUAUGACUUAUAAUGUGUUAUAUU-UUUAUUUCCCCAGCCCCAAUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU -------------.....((((((...(..((((((((.((((((.........)))))).)-))))).......((((.((......)).))))...))..)...))))))... ( -25.00) >consensus UAC_AUUA______UAAGCACACAAAUUUACAUCACAACUUUGACUUAUACAGUGUUACAUU_UUCAUCUCCACAGCCCCACUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU ....................................................((((...................((((............))))((((......)))))))).. (-11.70 = -11.54 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:50 2006