Locus 3148

Sequence ID 2R_DroMel_CAF1
Location 10,755,185 – 10,755,292
Length 107
Max. P 0.940793
window5185

overview

Window 5

Location 10,755,185 – 10,755,292
Length 107
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 80.83
Mean single sequence MFE -27.83
Consensus MFE -20.94
Energy contribution -22.83
Covariance contribution 1.89
Combinations/Pair 1.09
Mean z-score -2.19
Structure conservation index 0.75
SVM decision value 1.31
SVM RNA-class probability 0.940793
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10755185 107 - 20766785
AUGACGAGCAGACGCAUACGUAUGAACAUACUUAAAUAUGUAUGCAUAGUCAUCAGACGGCUGUGUGAAUAUUAGUUGCUAUACAUUUGUUAAAUCUUUUCAAUGGA--------
(((...(((((.(((((((((((............))))))))))((((((.......))))))..........))))))...))).....................-------- ( -22.00)
>DroSec_CAF1 19450 104 - 1
AUAACAAGCAGACGCAUACGUUUGUAC--------AUAUGUAUGCAUAGUCUUCAGACGGCUGUUUGAAUAUUAGUUGCUAUACAUU---UGAAUCUUUUCAAUGGAUGCUUUGA
....(((((((.(((((((((......--------..))))))))...(((....)))).)))))))..........((....((((---.(((....)))))))...))..... ( -26.50)
>DroSim_CAF1 20711 109 - 1
AUGACGAGCAGACGCAUACGUAUGUACGU------AUAUGUAUGCAUAGUCUUCAGAAGGCUGUCUGGUUAUUAGGUGCUAUAUAUUUGUUGAAUCUUUUCAAUGGAUGCCUUGA
.....((.((((((((((((((((....)------))))))))))..(((((.....)))))))))).)).(((((.((.....(((..(((((....)))))..)))))))))) ( -35.00)
>consensus
AUGACGAGCAGACGCAUACGUAUGUAC_U______AUAUGUAUGCAUAGUCUUCAGACGGCUGUCUGAAUAUUAGUUGCUAUACAUUUGUUGAAUCUUUUCAAUGGAUGC_UUGA
......((((...((((((((((............)))))))))).((((..((((((....))))))..))))..))))...((((..(((((....)))))..))))...... (-20.94 = -22.83 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:36 2006