Locus 3147

Sequence ID 2R_DroMel_CAF1
Location 10,753,096 – 10,753,209
Length 113
Max. P 0.951193
window5184

overview

Window 4

Location 10,753,096 – 10,753,209
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.14
Mean single sequence MFE -23.15
Consensus MFE -17.61
Energy contribution -17.67
Covariance contribution 0.06
Combinations/Pair 1.18
Mean z-score -1.32
Structure conservation index 0.76
SVM decision value 1.41
SVM RNA-class probability 0.951193
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10753096 113 - 20766785
AUCUGCGGCUCAUUAUCU----AGGUAUGGCCAGGUGGAAUUAACACUUUCACCGCACUGACAGAAAAACAUUGUCCUUU-UUAAGGGGAACCAAAUAA--UAAUAUAGUUUAUAACAAU
...((((((.(((.((..----..)))))))).(((((((.......))))))))))..(((((.......)))))....-....((....))......--................... ( -22.50)
>DroSec_CAF1 17451 112 - 1
AUCUGCGGCUCAUUAUCU----AGGUAUGGCCAGGUGGAAUUAACACUUUCACCGCACUGACAGAAAAUCAUUGUCCUUU-UUAAGGGGAAACAAAUAA--AAAUAUAGUCUUUAACAA-
...((((((.(((.((..----..)))))))).(((((((.......))))))))))..(((.............(((..-...)))(....)......--.......)))........- ( -23.10)
>DroSim_CAF1 18643 112 - 1
AUCUGCGGCUCAUUAUCU----AGGUAUGGCCAGGUGGAAUUAACACUUUCACCGCACUGACAGAAAAACAUGGUCCUUA-UUAAGGGGAAACAAAUAA--UAAUACAGUUUAUAACAA-
.((((((((.(((.((..----..)))))))).(((((((.......))))))).....).)))).((((.((....(((-(((...(....)...)))--)))..)))))).......- ( -23.90)
>DroEre_CAF1 17117 97 - 1
AUCUGCGGCUCAUUAUCU----AGGUAUGGCCAGGUGGAGUUAACACUUUCACCGCACUGACAAAAAAACAUUAUCCUGGAUGAAGUGCUAUUAU-UGU--ACC----------------
......(((.(.((((((----(((.(((....(((((((.......)))))))(......).......)))...))))))))).).))).....-...--...---------------- ( -22.90)
>DroYak_CAF1 17568 99 - 1
AUCCGCGGCUCAUUAUCU----GGGUAUGGCCAGGUGGAGUUAACACUUUCACCGCACUGGCAAAAAAAGAUUAUCCUGAAUCAAGGGUAAAUAAAUAA--ACAA---------------
.......(((((.....)----))))...((((((((((((....)))....)))).))))).........(((((((......)))))))........--....--------------- ( -24.60)
>DroAna_CAF1 15871 106 - 1
AUCUGUGGGCUUAUAUCUCUUAAGAUAUCGCCAGGUGGAAUUAACACUUUCACCACGCUGCGAGGAAAUUAAUUUACUC--UUAAGG-AAUAUAAUUAUCAAAAA----------ACUA-
.....(((..((((((..(((((((..((((..(((((((.......))))))).....)))).(((.....)))..))--))))).-.))))))...)))....----------....- ( -21.90)
>consensus
AUCUGCGGCUCAUUAUCU____AGGUAUGGCCAGGUGGAAUUAACACUUUCACCGCACUGACAGAAAAACAUUGUCCUUA_UUAAGGGGAAACAAAUAA__AAAU__________ACAA_
....((((((...(((((....))))).)))).(((((((.......)))))))))..................((((......))))................................ (-17.61 = -17.67 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:35 2006