| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,751,185 – 10,751,299 |
| Length | 114 |
| Max. P | 0.836924 |
| Location | 10,751,185 – 10,751,299 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.22 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -16.10 |
| Energy contribution | -15.49 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.836924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10751185 114 - 20766785 UUCUAAAAUCGAAUUACAAAUUCAAGCGCAGAGCGAUGUCGAUGGCCAUCCGCGCACUUCCUGCGACCACGACGCCAGCGGAAGCGCGUAGAGCAGAACCAAGCCAAAACACCG ..........((((.....))))..((((.((((.((....)).))..)).)))).....((((.......((((..((....))))))...)))).................. ( -25.70) >DroPse_CAF1 14870 90 - 1 UUUUAAAAUCAAAUUACAAAUUCAAACGCAGAGAAAUGCCGAC---GAUCCGCGCACUUCCUGUGG------CAUCAGCGGAAGCGCGUACACCA---------------CCGA ..............(((.........(((((.(((.(((((..---....)).))).)))))))).------.....(((....)))))).....---------------.... ( -20.60) >DroSim_CAF1 16709 114 - 1 UUCUAAAAUCGAAUUACAAAUUCAAGCGCAGAGCGAUGUCGAUGGCCAUCCGCGCACUUCCUGCGACCACGACGCCAGCGGAAGCGCGUAGAGCAGAACCAAGCCAAAACACCA ..........((((.....))))..((((.((((.((....)).))..)).)))).....((((.......((((..((....))))))...)))).................. ( -25.70) >DroWil_CAF1 22281 90 - 1 UUCUAAAAUCAAAUUACAAAUUCAAACGCAGAAAUAUGCUG---ACAAUGCGCGCACUUCCUGUC---CCGACGACAACGGAAGCGCGUACACCA------------------A ...........................(((......)))..---....((..(((.(((((((((---.....))))..))))).)))..))...------------------. ( -20.60) >DroAna_CAF1 13829 87 - 1 UUCUAAAAUCGAAUUACAAAUUCAAGCGCAGAGACAUGCCG---GCGAUCCGCGCACUUCCUGCCGCAA------AAGCGGAAGCGCGUACACCA------------------A ..........((((.....))))..((((((.((..(((((---(....))).)))..)))).((((..------..))))..))))........------------------. ( -23.70) >DroPer_CAF1 14802 90 - 1 UUUUAAAAUCAAAUUACAAAUUCAAACGCAGAGAAAUGCCGAC---GAUCCGCGCACUUCCUGUGG------CAUCAGCGGAAGCGCGUACACCA---------------CCGA ..............(((.........(((((.(((.(((((..---....)).))).)))))))).------.....(((....)))))).....---------------.... ( -20.60) >consensus UUCUAAAAUCAAAUUACAAAUUCAAACGCAGAGAAAUGCCGA__GCGAUCCGCGCACUUCCUGCGG__A___CGCCAGCGGAAGCGCGUACACCA________________C_A ...........................(((......)))............((((.(((((.((.............))))))).))))......................... (-16.10 = -15.49 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:34 2006