Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,740,015 – 10,740,110 |
Length | 95 |
Max. P | 0.943481 |
Location | 10,740,015 – 10,740,110 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 87.34 |
Mean single sequence MFE | -40.14 |
Consensus MFE | -32.79 |
Energy contribution | -33.07 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.05 |
Structure conservation index | 0.82 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10740015 95 - 20766785 AGCUCGACUGGAUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGACAG------UCGCACCAGUCGGA-------UGUCGGAUGUUGGCCCGGUCCAA .....((((((.((((((((((((((((.....).))))))))))).....((((((.------.(((....).))..-------))))))..))))..))))))... ( -38.60) >DroSec_CAF1 7090 88 - 1 AGCUCGACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG------UCGCACCAGUCGG--------------AUGUUGGCCCGGUCCGA .....(((((((..((((((((((((((.....).))))))))))).....(((((..------........)))))--------------..))..).))))))... ( -36.40) >DroSim_CAF1 6715 88 - 1 AGCUCGACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG------UCGCACCAGUCGG--------------AUGUUGGCCCGGUCCGA .....(((((((..((((((((((((((.....).))))))))))).....(((((..------........)))))--------------..))..).))))))... ( -36.40) >DroEre_CAF1 6956 102 - 1 AGCUCGACUGGCCGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG------UCGCACCAGUCGGAUGUCAGAUGUCGGGUGUUGGCCCGGUCCGA .....(((((((((((((((((((((((.....).)))))))))))....(((((((.------..(((((....)).)))....))))))).))))).))))))... ( -48.00) >DroYak_CAF1 6694 101 - 1 AGCUCCACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAGUUGCAGUCGCAGCAGUAGGA-------UGUCGGAUGUUGGCCCGGUCCGA .(..((...(((..((.(((((((((((.....).))))))))))((((((...((.(((((....))))).)).)))-------.)))....))..))).))..).. ( -41.30) >consensus AGCUCGACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG______UCGCACCAGUCGGA_______UGUCGGAUGUUGGCCCGGUCCGA .....(((((((((((((((((((((((.....).))))))))))).....(((((................)))))................))))).))))))... (-32.79 = -33.07 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:30 2006