| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,728,734 – 10,728,847 |
| Length | 113 |
| Max. P | 0.804308 |
| Location | 10,728,734 – 10,728,847 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.31 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -10.35 |
| Energy contribution | -12.35 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10728734 113 + 20766785 CCUAAAUAUACAUUACAGA-UAUUUUUUACU----AUGAUCAGUAUGUUGCGGA-CUAUCGACUACCACAAAAAACGC-UGAAAGUCUAUCGAUGAUUUUACAAGAUGCUUCAUCCCUGA ...............(((.-...........----....((((..(.(((.((.-..........)).)))...)..)-))).........(((((..............))))).))). ( -13.74) >DroSec_CAF1 65538 115 + 1 CCUAAAUAUAGAUUACAGAAUUUAUUUUACU----GCGAUCAGUAUGUUGCGGAAGUAUCGACUACCACAAAAAACGU-UGAAGGUGUAUCGAGGAUUUUACAAGAUACUGCAUCCCUGA ..((((.(((((((....)))))))))))..----..(((((((((.(((..(((...((((.((((.(((......)-))..))))..))))...)))..))).)))))).)))..... ( -24.20) >DroSim_CAF1 65858 116 + 1 CCUAAAUAUAGAUUACAGAAUUUAUUUUACU----GCGAUCAGUAUGUUGCGAAAGUAUCGACUACCACAAAAAACGUUUGAAGGUGUAUCGAUGAUUUUACAAGAUACUGCAUCCCUGA ..((((.(((((((....)))))))))))..----..(((((((((.(((..(((.((((((.((((.((((.....))))..))))..)))))).)))..))).)))))).)))..... ( -26.10) >DroEre_CAF1 72587 98 + 1 --------AA-------------AUUUUAGAACGGGCUGUCAGAAUUUUACGGAAGUAUCGAUGACCACAAAGAAUUU-UGAUGGUGUAUCGAUGCUUUUACAAAAGCCUGCAGCCCUGA --------..-------------..........((((((.(((..((((..(((((((((((((((((((((....))-)).)))).)))))))))))))..))))..)))))))))... ( -39.10) >DroYak_CAF1 67380 99 + 1 --------UAC------------AUUUCAGACGGGCGUGCCAAUGUGUUACGGUAGUAUCGAUGACCACAAUGAAUUU-UAAAGGUGUAUCGAUGCUUUCCCAAGAGCCUGUAGCCCUGA --------...------------...(((((((((((((.(.....).)))((.(((((((((((((...........-....))).))))))))))...))....))))))....)))) ( -28.36) >consensus CCUAAAUAUACAUUACAGA_U_UAUUUUACU____GCGAUCAGUAUGUUGCGGAAGUAUCGACUACCACAAAAAACGU_UGAAGGUGUAUCGAUGAUUUUACAAGAUACUGCAUCCCUGA ........................................((((((.(((.((((.((((((..(((................)))...)))))).)))).))).))))))......... (-10.35 = -12.35 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:29 2006