Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,727,711 – 10,727,822 |
Length | 111 |
Max. P | 0.747173 |
Location | 10,727,711 – 10,727,822 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -40.02 |
Consensus MFE | -28.64 |
Energy contribution | -28.25 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.37 |
Mean z-score | -1.75 |
Structure conservation index | 0.72 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747173 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10727711 111 - 20766785 AUUUAAGGAAUCCAAACCGGACAUCGAAUCGCCGCCGAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG .........((((....(((........((((((((..(((....((((((.((((((.....)))))))))))))))))))))))......))).(....)...)))).. ( -41.54) >DroSec_CAF1 64559 111 - 1 AUUCAAGGAGUCCAAACCGGACAUCGAAUCGCCGCCCAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG ((((..((.((((.....))))........((.(((((...((((((((((.((((((.....)))))))))))))..)))..))))).)).))(.(....))..)))).. ( -48.60) >DroSim_CAF1 64850 111 - 1 AUUCAAGGAGUCCAAACCGGACAUCGAAUCGCCGCCAAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG ((((..((.((((.....))))......(((((((((.......(((((((.((((((.....))))))))))))).)))))))))......))(.(....))..)))).. ( -44.40) >DroEre_CAF1 71491 111 - 1 AUACAAGGAAUCCAAGCCGGACAUCGAGUCGCCACCGAAGAACUACCGCCCCGCCGAGGUUAAUUCAGUGGGUGGCCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG .........((((..(((.(((.....)))(((((((........((((((.((.(((.....))).))))))))..))))))).)))......(.(....))..)))).. ( -34.60) >DroAna_CAF1 64338 109 - 1 UCCUAAAGAGUCUAAGCAAGAUCUGGACUCUCCUCCGAAAAAUUACCGCCCCGCUGAGGUCAACUCGGUGGGUGGGCUGGUGGUGGGAAGCUCGGAUGACAAUAAGGAU-- ((((...(((((((.........)))))))((.(((((....((((((((((((((((.....))))))))(....).)))))))).....))))).)).....)))).-- ( -42.00) >DroPer_CAF1 66555 111 - 1 UCCAAAAGACUCCAACAAAGAUGGCGAAUCUCCUCCUAAAAACUAUCGGCCAGCUGAGGUCAACUCGGUGGGAGGUCUAGUUGUGGGCAGCACUGACGAAAGUAAGGAUUC (((....(.(((((((..((((.....))))((((((.....(....)....((((((.....))))))))))))....)))).)))).......((....))..)))... ( -29.00) >consensus AUUCAAGGAGUCCAAACCGGACAUCGAAUCGCCGCCGAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG .........((((.................((.(((.(...((((((((((.((((((.....))))))))))))..))))..).))).)).....(....)...)))).. (-28.64 = -28.25 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:27 2006