Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,725,605 – 10,725,703 |
Length | 98 |
Max. P | 0.775984 |
Location | 10,725,605 – 10,725,703 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -19.91 |
Consensus MFE | -11.19 |
Energy contribution | -12.08 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.37 |
Mean z-score | -2.16 |
Structure conservation index | 0.56 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10725605 98 - 20766785 UAGCUAAAGGCCUUGGUAAAAAACCGAAAGA---------AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAAGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUG (((((..((((((((((.....)))))....---------................((...(((((((............)))))))...))))))).....))))) ( -21.80) >DroSec_CAF1 62452 98 - 1 CAGCUAAAGGCCUGGGUAAAAAACCGAAAGA---------AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAGGAAGAUGAUGAUAUGAGGGGCUUGGAGGAGCUG (((((..((((((.(((.....)))......---------..............(((..((.((((((.........)))))).))..))))))))).....))))) ( -21.20) >DroSim_CAF1 62744 98 - 1 CAGCUAAAGGCCUGGGUAAAAAACCGAAAGA---------AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAGGAAGAUGAUGAUAUGAGGGGCUUGGAGGAGCUG (((((..((((((.(((.....)))......---------..............(((..((.((((((.........)))))).))..))))))))).....))))) ( -21.20) >DroEre_CAF1 69296 98 - 1 CAGCAAAAGGACUGAUUAAGAAACCGAAAGA---------GAAAGAUGAAAAGAUUCCAAUGGUUAUCAAGAAGGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUA .(((....................(....).---------..........(((.((((...(((((((............)))))))...)))))))......))). ( -13.90) >DroYak_CAF1 64215 98 - 1 GAGCUAAGGGCCUGAUCAAAAAACCGAAAGA---------UAAAGAUGAAAAGAUUCCAAUGGUUAUUAAGAAGGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUA .((((..(((((((((((......(....).---------..............((((...............)))).....)))))....)))))).....)))). ( -19.36) >DroMoj_CAF1 94864 107 - 1 CGGCCAAAGUGCCGGUUAAGAAGCCUAAGGAGACAAAAGAGGAGAAGGAGAAGGUACCUGUGGUUAUCAAAAAGGAGGAAGACGAGCUCAAGGGCCUUGAAGAACUG .(((((..(((((((((....))))...(....)..................)))))...))))).................((((((....)).))))........ ( -22.00) >consensus CAGCUAAAGGCCUGGGUAAAAAACCGAAAGA_________AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAGGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUG (((((..((((((...........(....)...............................(((((((............)))))))....)))))).....))))) (-11.19 = -12.08 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:26 2006