Locus 3138

Sequence ID 2R_DroMel_CAF1
Location 10,722,043 – 10,722,136
Length 93
Max. P 0.566341
window5173

overview

Window 3

Location 10,722,043 – 10,722,136
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 80.43
Mean single sequence MFE -34.95
Consensus MFE -22.01
Energy contribution -21.82
Covariance contribution -0.19
Combinations/Pair 1.38
Mean z-score -1.52
Structure conservation index 0.63
SVM decision value 0.07
SVM RNA-class probability 0.566341
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10722043 93 + 20766785
AGCAUAAUCCGGGGUGGGUUGUACCUGCUGCUGGGUAUCCAGCAAAACUGGGGCCGCCUCCAUUUCUCCAAAUUGUAUUGGACCGGUCUGCUG
((((....((((((.((((.(..((...((((((....)))))).....))..).)))))).....(((((......)))))))))..)))). ( -34.70)
>DroGri_CAF1 68857 90 + 1
AGCAUAGUCGGCAGCUGCUUGCACCUGCU---GCGGAUCCAGCAUGACAGGUGCCGCCUCCAUUUCACCGAAUUGUAUGGGCGUCGAUUGCUG
((((..((((((........(((((((((---((.......))).).))))))).((((.((.(((...))).))...)))))))))))))). ( -33.20)
>DroSec_CAF1 58885 93 + 1
AGCAUAGUCCGGGGUGGGUUGUACCUGCUGCUGGGUAUCCAGCAAAACUGGGGCCGCCUCCAUUUCUCCAAACUGUAUUGGACCGGUCUGCUG
((((..(.((((((.((((.(..((...((((((....)))))).....))..).)))))).....(((((......))))))))).))))). ( -35.10)
>DroEre_CAF1 65724 90 + 1
AGCAUAAUCUGGGGUGGGCUGUACCUGCUGCUG---CUCCAGCAUAACUGGAGCCGCUUCCAUUUCUCCAAACUGUAUUGGACCGGUCUGCUG
((((....((((((..((.....))..))((.(---((((((.....))))))).)).........(((((......)))))))))..)))). ( -33.10)
>DroYak_CAF1 60650 93 + 1
AGCAUAAUCUGGAGUGGGCUGUACCUGCUGCCGAGGAUCCAGCAUAACUGGGGCCGCUUCCAUUUCUCCAAACUGUAUUGGACCGGUCUGCUG
((((....(((((((((((.((....)).)))..((..((((.....))))..)).....))))..(((((......)))))))))..)))). ( -27.90)
>DroAna_CAF1 58630 93 + 1
GGCAUAGUCCGGUGUCGGCUGGACCUGCUGCUGGGGAUCUAGCAGCACGGGAGCUGCUUCCAUCUCGCCGAACUGGAUGGGCCCUGGCUGCUG
(((...(((((((.(((((.(((..(((((((((....))))))))).(((((...))))).))).))))))))))))..))).......... ( -45.70)
>consensus
AGCAUAAUCCGGGGUGGGCUGUACCUGCUGCUGGGGAUCCAGCAUAACUGGGGCCGCCUCCAUUUCUCCAAACUGUAUUGGACCGGUCUGCUG
((((....((((.(..(((.((.((...(((((......))))).....)).)).)))..).....(((((......)))))))))..)))). (-22.01 = -21.82 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:25 2006