Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,709,561 – 10,709,659 |
Length | 98 |
Max. P | 0.999873 |
Location | 10,709,561 – 10,709,659 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 95.31 |
Mean single sequence MFE | -19.82 |
Consensus MFE | -17.80 |
Energy contribution | -17.52 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.21 |
Mean z-score | -3.07 |
Structure conservation index | 0.90 |
SVM decision value | 4.33 |
SVM RNA-class probability | 0.999873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10709561 98 - 20766785 AACCCAAUUUUAUCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU ........................................((((((((((((...((....))))))))))))))....................... ( -19.80) >DroSec_CAF1 46396 98 - 1 AACCCAAUUUUAGCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGUCAAAUUUUUAUUUUACCCUCUUCGAU ........................................((((((((((((...((....))))))))))))))....................... ( -17.10) >DroSim_CAF1 46585 98 - 1 AACCCAAUUUUAUCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU ........................................((((((((((((...((....))))))))))))))....................... ( -19.80) >DroEre_CAF1 53052 97 - 1 AACCCAAUUUUAUCAACUAUUCCAAACAUUCUACCAUUUAUUGGCUGCAGGCCCAGUUAACGGGUUUGUGGCCAAAUUUUCAUUUUU-CCUCUUCGAU ........................................(((((..(((((((.......)))))))..)))))............-.......... ( -22.60) >DroYak_CAF1 48032 98 - 1 AACCCAAUUUUAUCAACUAUUGCAAUCAUUCUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU ........................................((((((((((((...((....))))))))))))))....................... ( -19.80) >consensus AACCCAAUUUUAUCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU ........................................((((((((((((...((....))))))))))))))....................... (-17.80 = -17.52 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:23 2006