Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,694,879 – 10,694,984 |
Length | 105 |
Max. P | 0.936487 |
Location | 10,694,879 – 10,694,984 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.63 |
Mean single sequence MFE | -34.49 |
Consensus MFE | -27.19 |
Energy contribution | -28.18 |
Covariance contribution | 0.99 |
Combinations/Pair | 1.26 |
Mean z-score | -1.85 |
Structure conservation index | 0.79 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10694879 105 + 20766785 AACUCCUCUGGCAGGGGGCCAAAAACGAAAAAAAAAAUGCAGGAACUCGCUCUGCUCGAUUCAAAAUCGAUUGAGUGGCUCA---GGGGGCGGCUAUUUGGCCAGGGG ....((((((((....((((...........................(((((...(((((.....)))))..)))))(((..---...))))))).....)))))))) ( -36.50) >DroPse_CAF1 34104 83 + 1 AA------UGGCAGGGGGCCAGA-----------AAUUCGGAGCAUUCCUUCAGCUCCGGUCGAAAUCGAUUGAACAGCCCC---GGGGGC---UGGGUGGCUGGA-- ..------((((.....))))..-----------.....((......))((((((((((((((....)))))...((((((.---..))))---)))).)))))))-- ( -30.90) >DroSec_CAF1 31804 100 + 1 AACUCCUCUGGCAGGGGGCCAAAAACGAAA----AAUUGCAGGAACUUGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCA---GGGGGUGGCUAUUUGGCUAGGG- ...(((((((((.(((..((..........----.......))..)))((((((.(((((.....))))))))))).)).))---)))))(((((....)))))...- ( -30.23) >DroSim_CAF1 31670 100 + 1 AACUCCUCUGGCAGGGGGCCAAAAACGAAA----AAUUGCAGGAACUCGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCA---GGGGGCGGCUAUUUGGCCAGGG- .....(((((((....((((..........----.............(((((((.(((((.....))))))))))))(((..---...))))))).....)))))))- ( -36.00) >DroEre_CAF1 32002 100 + 1 AACUCCUCUGGCUGGUGGCCAAAAACGAAA----AAUGGCGAAAACUCGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCG---GGGGGCGGCUAUUUGGCCGGGG- .....(((((((..((((((..........----.............(((((((.(((((.....))))))))))))(((..---...)))))))).)..)))))))- ( -38.80) >DroYak_CAF1 33106 104 + 1 AACUCCUCUGGCUGAGGGCCAAAAACGAAA----AAUUGCAAGAAUUCGCUCAGCUCGAAUCAAAAUCGAUUGAGUGGCACGAAGGGGGGCGACUAUUUGGCCAGGGG ....((((((((..((.(((..........----............((((((((.((((.......))))))))))))..(....)..))).....))..)))))))) ( -34.50) >consensus AACUCCUCUGGCAGGGGGCCAAAAACGAAA____AAUUGCAAGAACUCGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCA___GGGGGCGGCUAUUUGGCCAGGG_ .....(((((((....((((...........................(((((((.(((((.....))))))))))))((((......)))))))).....))))))). (-27.19 = -28.18 + 0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:22 2006