Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,693,818 – 10,693,934 |
Length | 116 |
Max. P | 0.836502 |
Location | 10,693,818 – 10,693,934 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -20.12 |
Consensus MFE | -16.19 |
Energy contribution | -16.62 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.98 |
Structure conservation index | 0.80 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.836502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10693818 116 + 20766785 UCCAAUUAAAUAUGAAAUGAAAACUUCUGCAAAAUGCGACCAAAAACAAAGCCAUGUUUGACUCUUGCAUUUUUAAUUUAUUGAGCACAUAUU---UCUUUGUGCACUUAAAUAUUUCA ............(((((((...........(((((((((....(((((......))))).....)))))))))...........(((((....---....))))).......))))))) ( -21.10) >DroSec_CAF1 30780 116 + 1 UCCAAUUAAAUAUGAAAUGAAAACUUCUGCAAAAUGCGACCAAACACAAAGCCAUGUUUGACUCUUGCAUUUUUAAUUUAUUGAGCACAUAUU---UCUUUGUGCACUUAAAUAUUUCA ............(((((((...........(((((((((.((((((........))))))....)))))))))...........(((((....---....))))).......))))))) ( -22.00) >DroSim_CAF1 30631 116 + 1 UCCAAUUAAAUAUGAAAUGAAAACUUCUGCAAAAUGCGACCAAAAACAAAGCCAUGUUUGACUCUUGCAUUUUUAAUUUAUUGAGCACAUAUU---UCUUUGUGCACUUAAAUAUUUCA ............(((((((...........(((((((((....(((((......))))).....)))))))))...........(((((....---....))))).......))))))) ( -21.10) >DroEre_CAF1 31015 113 + 1 UCUAAUUAAAAAUGAAAUGAAAACUU--GCGAUAUGCGGCCAAAAACAAAGCACUGUUUGACUCUUGCAUUUUUAAUUUAUCGAACACAUAUUGUUUCAUUGU----UUAAAUAUUUUA .....((((((((((((..(......--.((((((((((....(((((......))))).....))))).........)))))........)..))))))).)----))))........ ( -16.26) >consensus UCCAAUUAAAUAUGAAAUGAAAACUUCUGCAAAAUGCGACCAAAAACAAAGCCAUGUUUGACUCUUGCAUUUUUAAUUUAUUGAGCACAUAUU___UCUUUGUGCACUUAAAUAUUUCA ............(((((((...........(((((((((....(((((......))))).....)))))))))...........(((((...........))))).......))))))) (-16.19 = -16.62 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:21 2006