Locus 3131

Sequence ID 2R_DroMel_CAF1
Location 10,684,974 – 10,685,068
Length 94
Max. P 0.606281
window5165

overview

Window 5

Location 10,684,974 – 10,685,068
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 84.07
Mean single sequence MFE -27.90
Consensus MFE -19.29
Energy contribution -19.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.69
SVM decision value 0.15
SVM RNA-class probability 0.606281
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10684974 94 + 20766785
CUGCUAGUACUAGUAUCGGCAAUGGUGUUGGUAUUGGUGUUGGCAUUGGUAUUGGUAUUGGUAUUGGUGUGUGCCGCCUGAAGGACCUCCACGC
.((((((((((((((((((((....)))))))))))))))))))).(((....(((...(((((......))))).((....))))).)))... ( -33.00)
>DroSec_CAF1 21970 75 + 1
CUGCUAGUACUA-UAUCGGCAAUGGUGUUGGUAUU------------------GGUAUUGGUAUUGUUGUGUGCCUCCUGAAGGACCUCCACGC
.(((((((((((-((((((((....)))))))).)------------------)))))))))).....(((((..(((....)))....))))) ( -24.40)
>DroSim_CAF1 21643 82 + 1
CUGCUAGUACUAGUAUCGGCAAUGGUGUUGGUAUU------------GGCAUUGGUAUUGGUAUUGGUGUGUGCCGCCUGAAGGACCUCCACGC
.(((((((((((((((((....)))))))))))))------------)))).(((....(((...((((.....))))......))).)))... ( -26.30)
>consensus
CUGCUAGUACUAGUAUCGGCAAUGGUGUUGGUAUU____________GG_AUUGGUAUUGGUAUUGGUGUGUGCCGCCUGAAGGACCUCCACGC
.((((((((((((((((((((....))))))))))..................)))))))))).....(((((...((....)).....))))) (-19.29 = -19.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:17 2006