| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,060,091 – 2,060,198 |
| Length | 107 |
| Max. P | 0.596811 |
| Location | 2,060,091 – 2,060,198 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 70.63 |
| Mean single sequence MFE | -33.75 |
| Consensus MFE | -18.03 |
| Energy contribution | -17.57 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2060091 107 - 20766785 UGCUUCGCAUUUUUCAUCCGCGGUGCGCUACACUUUAUUUGUGUGGGCAUGCUGCUUUCGAUGGCAGAGUUGGUCUAUGGUG------CAUCGGUGGUUGGUUGAUUAAAGGG ..(((...(((..(((.((((((((((((((((.......)))(((((...(((((......))))).....))))))))))------)))).)))).)))..)))..))).. ( -34.80) >DroSec_CAF1 44876 99 - 1 ------GCAUUUUUCAACCGGGGUGCGCUACACUUUAUGUGUGUGGGCAUGCUGCUUUCGAUGGCCUA--UGGUCUAUGGAG------CUUCGGUGGGUGCUUGAUUAAAGAG ------((((((....(((((.((((.((((((.......)))))))))).).(((((....((((..--.))))...))))------)..))))))))))............ ( -30.90) >DroSim_CAF1 45545 105 - 1 UGCUUCGCAUUUUUCAUCCGGGGUGCGCUACACUUUAUGUGUGUGGGCAUGCUGCUUUCGAUGGCCUA--UGGUCUAUGGUG------CUUCGAUGGGUGGUUGAUUAAAGAG ..(((...(((..((((((((.((((.((((((.......)))))))))).))....((((.((((((--((...))))).)------)))))).))))))..)))..))).. ( -33.10) >DroEre_CAF1 44265 97 - 1 -------CAUUUUUUGUACGGGGUGCGCUACACUUGAUGUGUGUGGGCAUGCUGCACUCAACUGCC------UUCUAUGGCUGUU---AUUCCAUGUGCAGUUGAUUAAAGGG -------........((.(((.((((.((((((.......)))))))))).))).))((((((((.------...(((((.....---...))))).))))))))........ ( -32.70) >DroYak_CAF1 47445 112 - 1 UGCUUCGCAUUUUUCAUACGUGGUGCGCUACACUUGAUGUGUGUGGGCAUGCUGCAUUCGAUUGCAGCAUUGGUCGAUGGCUUUUGGUCUUCAACGAGUGAUUGGUUA-AGGG ((((.(((((...(((...((((....))))...)))...)))))))))(((((((......)))))))(((..((((.(((((((.....))).)))).))))..))-)... ( -36.60) >DroAna_CAF1 46820 108 - 1 UGCUUCAAUGUUUCCACAAAGAGUGCGCUACACAUAAUGUGUGUGGGCAUACCCGGUUCGAUUGCUCCA-UCGGCUAUUGGGGU----UUUUGGUGGGUGCUUCACCCCAAGG .............((.((((((((((.((((((((...)))))))))))).(((((((((((......)-))))..)))))).)----)))))(.(((((...))))))..)) ( -34.40) >consensus UGCUUCGCAUUUUUCAUACGGGGUGCGCUACACUUUAUGUGUGUGGGCAUGCUGCUUUCGAUGGCCGA__UGGUCUAUGGCG______CUUCGAUGGGUGGUUGAUUAAAGGG ..............((((((..((((.((((((.......))))))))))...(((......))).............................))))))............. (-18.03 = -17.57 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:12 2006