Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,672,567 – 10,672,669 |
Length | 102 |
Max. P | 0.930100 |
Location | 10,672,567 – 10,672,669 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.82 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -16.84 |
Energy contribution | -16.48 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -1.44 |
Structure conservation index | 0.91 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10672567 102 - 20766785 AUUUCAAGGCAAAUGUUACGAGGAAAACCAAGUGAGCAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAAUAAUAA ........((...((((((..((....))..)))).)).............(((((.......((((....)))).......)))))..))........... ( -17.24) >DroSec_CAF1 9450 102 - 1 AUUUCAAGGCAAAUGUUACGAGGGAAACCAAGGGAACAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAACAAUAA ........((...((((.(..((....))..)..)))).............(((((.......((((....)))).......)))))..))........... ( -20.54) >DroSim_CAF1 9528 102 - 1 AUUUCAAGGCAAAUGUUACGAGGAAAACCAAGUGAACAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAACAAUAA ........((...((((((..((....))..))).))).............(((((.......((((....)))).......)))))..))........... ( -17.24) >DroEre_CAF1 9519 102 - 1 AUUUUUGGGCAAAUGUUACGAGGAAAACCAAGUGAGCAGCACACAUAAACCAUCAAAUUAAAAGCUGUUGGCAGUGGGAAAAUUGCUUGGCAAUAAUAAUAA (((.(..(((((.(.((((..((....))..((.((((((.......................)))))).)).)))).)...)))))..).)))........ ( -19.50) >DroYak_CAF1 9733 102 - 1 AUUUCAAAGCAAAUGUUACGAGGAAAACCAAGUGAACAGCACACAUAAACCAACAAAUUAGAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAAUUAUAA .((((...((...........((....))..((.((((((.......................)))))).)).))..))))(((((...)))))........ ( -18.00) >consensus AUUUCAAGGCAAAUGUUACGAGGAAAACCAAGUGAACAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAAUAAUAA .......(((((...(..((.((....))..((.((((((.......................)))))).))..))..)...)))))............... (-16.84 = -16.48 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:08 2006