Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,670,739 – 10,670,853 |
Length | 114 |
Max. P | 0.682308 |
Location | 10,670,739 – 10,670,853 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.19 |
Mean single sequence MFE | -32.54 |
Consensus MFE | -21.73 |
Energy contribution | -22.57 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.67 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10670739 114 + 20766785 AAAAGCCGCGGACUAAAUUGCCAAAUCCUCGAUCCAAUAAGAUGGGCUGCAACACCAGCCAGGAGCUAAAGACGAAGGAUGGCGCAGCCAUGGAUGCGGUCAGCAACGGCGAAC ....((((..((((.....((((..((((((.((..........(((((......)))))..........)))).))))))))(((.(....).))))))).....)))).... ( -35.05) >DroPse_CAF1 9982 105 + 1 AAUACAAGUGACUUAAAAU--CAAA-------UCAAAUAUAAUGGGCUGCAACACCAGCCAGGAGCUGAAGACGAAGGAUGGCGCCGCCAUCGACGCGGUCAGCAACGGGGAGC .......((..(((.....--....-------............(((((......))))).(..(((((...((...((((((...))))))....)).)))))..))))..)) ( -28.40) >DroEre_CAF1 7583 114 + 1 AAAAGCAGCGCACUAAAUUGCCAAAUCCUCGAGCCAGCAAGAUGGGCUGCAACACCAGCCAGGAGCUGAAGACGAAGGAUGGCGCCGCCAUCGAUGCGGUGAGCAAUGGCGAAC ........(((.....(((((...(((((((...((((......(((((......)))))....))))....)).)))))..((((((.......)))))).))))).)))... ( -36.80) >DroYak_CAF1 7918 97 + 1 -----------------UUGCCAAAUCCUCGAUCCAGUAAGAUGGGCUGCAACACCAGCCAGGAGCUGAAGACGAAGGAUGGCGCCGCCAUCGAUGCGGUCAGCAAUGGCGAAC -----------------((((((..((((..(((......))).(((((......)))))))))(((((...((...((((((...))))))....)).)))))..)))))).. ( -37.20) >DroAna_CAF1 7585 107 + 1 AAAAGCCGCGGACUAAAUUGUCAAA-------UCCAGGAUAAUGGGCUGCAACACCAGCCAGGAGCUGAAAACAAAGGAUGGGGCCGCCAUCGAUGCGGUCAGCAAUGGGGAUG .....((...(((......)))...-------.(((........(((((......)))))....(((((...((...(((((.....)))))..))...)))))..)))))... ( -29.40) >DroPer_CAF1 10050 105 + 1 AAUACAAGUGACUUAAAAU--CAAA-------UCAAAUAUAAUGGGCUGCAACACCAGCCAGGAGCUGAAGACGAAGGAUGGCGCCGCCAUCGACGCGGUCAGCAACGGGGAGC .......((..(((.....--....-------............(((((......))))).(..(((((...((...((((((...))))))....)).)))))..))))..)) ( -28.40) >consensus AAAAGCAGCGAACUAAAUUGCCAAA_______UCCAAUAAAAUGGGCUGCAACACCAGCCAGGAGCUGAAGACGAAGGAUGGCGCCGCCAUCGAUGCGGUCAGCAACGGCGAAC ............................................(((((......)))))....(((((...((...((((((...))))))....)).))))).......... (-21.73 = -22.57 + 0.83)
Location | 10,670,739 – 10,670,853 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.19 |
Mean single sequence MFE | -34.76 |
Consensus MFE | -20.38 |
Energy contribution | -20.85 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.59 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10670739 114 - 20766785 GUUCGCCGUUGCUGACCGCAUCCAUGGCUGCGCCAUCCUUCGUCUUUAGCUCCUGGCUGGUGUUGCAGCCCAUCUUAUUGGAUCGAGGAUUUGGCAAUUUAGUCCGCGGCUUUU ....(((((.(((((..(((.(....).)))(((((((((.((((.........(((((......))))).........)))).)))))..))))...)))))..))))).... ( -39.67) >DroPse_CAF1 9982 105 - 1 GCUCCCCGUUGCUGACCGCGUCGAUGGCGGCGCCAUCCUUCGUCUUCAGCUCCUGGCUGGUGUUGCAGCCCAUUAUAUUUGA-------UUUG--AUUUUAAGUCACUUGUAUU .......(..(((((..(((..((((((...))))))...)))..)))))..).(((((......)))))...((((..(((-------((((--....)))))))..)))).. ( -32.20) >DroEre_CAF1 7583 114 - 1 GUUCGCCAUUGCUCACCGCAUCGAUGGCGGCGCCAUCCUUCGUCUUCAGCUCCUGGCUGGUGUUGCAGCCCAUCUUGCUGGCUCGAGGAUUUGGCAAUUUAGUGCGCUGCUUUU ...(((((((((.....)))...))))))((((((..(((((...(((((....(((((......)))))......)))))..)))))...)))).....((....)))).... ( -38.50) >DroYak_CAF1 7918 97 - 1 GUUCGCCAUUGCUGACCGCAUCGAUGGCGGCGCCAUCCUUCGUCUUCAGCUCCUGGCUGGUGUUGCAGCCCAUCUUACUGGAUCGAGGAUUUGGCAA----------------- ((.((((((((.((....)).))))))))))(((((((((.((((.........(((((......))))).........)))).)))))..))))..----------------- ( -37.67) >DroAna_CAF1 7585 107 - 1 CAUCCCCAUUGCUGACCGCAUCGAUGGCGGCCCCAUCCUUUGUUUUCAGCUCCUGGCUGGUGUUGCAGCCCAUUAUCCUGGA-------UUUGACAAUUUAGUCCGCGGCUUUU ..........(((((..(((..(((((.....)))))...)))..)))))....(((((......)))))......((((((-------((.........)))))).))..... ( -28.30) >DroPer_CAF1 10050 105 - 1 GCUCCCCGUUGCUGACCGCGUCGAUGGCGGCGCCAUCCUUCGUCUUCAGCUCCUGGCUGGUGUUGCAGCCCAUUAUAUUUGA-------UUUG--AUUUUAAGUCACUUGUAUU .......(..(((((..(((..((((((...))))))...)))..)))))..).(((((......)))))...((((..(((-------((((--....)))))))..)))).. ( -32.20) >consensus GUUCCCCAUUGCUGACCGCAUCGAUGGCGGCGCCAUCCUUCGUCUUCAGCUCCUGGCUGGUGUUGCAGCCCAUCAUACUGGA_______UUUGGCAAUUUAGUCCGCUGCUUUU .....(((..(((((..((...((((((...))))))....))..)))))....(((((......)))))........)))................................. (-20.38 = -20.85 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:06 2006