| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,665,825 – 10,665,924 |
| Length | 99 |
| Max. P | 0.745636 |
| Location | 10,665,825 – 10,665,924 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -41.23 |
| Consensus MFE | -31.73 |
| Energy contribution | -32.03 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10665825 99 + 20766785 UCGAAAUGGGGGCCUUUCGUGAUGGCACGUAACGAGCUGCCAGACGGCGGCGUCUGUUGCAAUUGGCAGCGGGCUGCUCCGGUUACU----CC---CCCCCCCCCU .......(((((......(((....)))(((((..((((((....))))))(((((((((.....))))))))).......))))).----..---....))))). ( -42.50) >DroSec_CAF1 2959 102 + 1 GCAAAGUAGGUGCCUUUCGUGAUGGCACGUAACGAGCUGGCAGACGGCGUCGUCUGUUGCAAUUGGCAGCGGGCUGCUCCGGUUACU----CCAAACCCCUCCCCC ((....((.(((((.........))))).))....))(((.((.(((.((.(((((((((.....))))))))).)).)))....))----)))............ ( -34.90) >DroSim_CAF1 2971 101 + 1 GCAAAAUGGGGGCCUUUCGUGAUGGCACGUAACGAGCUGCCAGACGGCGGCGUCUGUUGCAAUUGGCAGCGGGCUGCUCCGGUUACU----CCAAACCCCUCCC-C .......(((((((.........)))..(((((..((((((....))))))(((((((((.....))))))))).......))))).----.....))))....-. ( -42.30) >DroEre_CAF1 2613 87 + 1 GGCAACUGGGAGCCUUUCGUGAUGGCACGUAACGAGCUGCCAGACGGCGGCGUCUGUUGCAAUUGGCAGCGGGCUGCUCCGGUUU-----------------CC-- ((.((((((.(((....((((....))))......((((((....))))))(((((((((.....))))))))).))))))))).-----------------))-- ( -39.90) >DroYak_CAF1 2795 104 + 1 GCCAAAUGGGGGCCUUUCGUGAUGGCACGUAACGAGCUGCCAGACGGCGGCGUCUGUUGCAAUUGGCAGCGGGCUGCUCCCAUUGCAUGCCCCAACUGCAUGCC-- ....(((((((((....((((....))))......((((((....))))))(((((((((.....))))))))).)))))))))((((((.......)))))).-- ( -49.70) >DroAna_CAF1 3242 96 + 1 ACCGAAGGGGGCUAUAUCGUGAUGGCACGUAACGAGCUGCCAGACGGCGGCGUCUGUUGCAAUUGGCAGCAGGCUGCACCUCUCAUA---------UCCCGCCC-U ...((.(((((((((......)))))..(((....((((((....))))))(((((((((.....)))))))))))).))))))...---------........-. ( -38.10) >consensus GCCAAAUGGGGGCCUUUCGUGAUGGCACGUAACGAGCUGCCAGACGGCGGCGUCUGUUGCAAUUGGCAGCGGGCUGCUCCGGUUACU____CC___CCCCUCCC__ ....(((.(((((....((((....))))......((((((....))))))(((((((((.....))))))))).))))).)))...................... (-31.73 = -32.03 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:03 2006