Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,662,828 – 10,662,924 |
Length | 96 |
Max. P | 0.529175 |
Location | 10,662,828 – 10,662,924 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 60.59 |
Mean single sequence MFE | -25.36 |
Consensus MFE | -12.72 |
Energy contribution | -12.08 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.44 |
Mean z-score | -1.31 |
Structure conservation index | 0.50 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10662828 96 - 20766785 GUAUUUUAUAGCCAUUUUGGUAUAGUCGGGCUGCGUGCGUAACACAUUACGUGGAUGCAUGCCGACUAUCUUUUGGUUUCCCUUAGUUUUUACCAU------------------------ .........(((((....((.((((((((.((((((((((((....))))))..))))).)))))))))))..)))))..................------------------------ ( -27.00) >DroVir_CAF1 1 90 - 1 GUGCUUGAUGGCCAAUUUUGUGUAGUCCGGCGCAGUGCGCAGCACAUUGCGCGGAUGCAUAGCA--GAC----UUUUUAUUGCUAUGCUUCACCAU------------------------ (((((.(((.((((....)).)).))).)))))..(((((((....)))))))((.((((((((--(..----......))))))))).)).....------------------------ ( -32.50) >DroPse_CAF1 1 114 - 1 GUAUUUUAUGGCCAACUUGGUGUAGUCGGGCGGCACGCGCAGAAUAUUGCGCGGAUGCAUGGCA--UAC----UUGUUCUUUUUAUUUCUGACCAUUUCAAUUUUUUUGGUUUGUUUAUU .........((((((.((((.((.((((((((...(((((((....)))))))..)))..((((--...----.))))..........))))).)).)))).....))))))........ ( -26.30) >DroWil_CAF1 1 84 - 1 GUAUUUAAUGGCCAAUUUUGUGUAGUCAGGUGGUGAGCGCAGCACAUUGCGAGGGUGCAUUUGA------------UUUUUCUUAGAUCUAACCAU------------------------ ..((((((.((..((((..(((((.((..(..(((.((...)).)))..)..)).)))))..))------------))..))))))))........------------------------ ( -17.10) >DroPer_CAF1 1 75 - 1 GUAUUUGAUGGCCAACUUGGUGUAGUCGGGCGGCACGCGCAGAAUAUUGCGCGGAUGCAUGGCA--UAC----UUGUUCAU--------------------------------------- .......(((..((....(((((.((((.(((...(((((((....)))))))..))).)))))--)))----)))..)))--------------------------------------- ( -23.90) >consensus GUAUUUGAUGGCCAAUUUGGUGUAGUCGGGCGGCGCGCGCAGCACAUUGCGCGGAUGCAUGGCA__UAC____UUGUUCUUCUUAGUUCU_ACCAU________________________ (((((.....(((.(((......)))..)))....(((((((....)))))))))))).............................................................. (-12.72 = -12.08 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:02 2006