Locus 312

Sequence ID 2R_DroMel_CAF1
Location 2,058,333 – 2,058,432
Length 99
Max. P 0.577119
window637

overview

Window 7

Location 2,058,333 – 2,058,432
Length 99
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 78.92
Mean single sequence MFE -27.00
Consensus MFE -14.27
Energy contribution -15.18
Covariance contribution 0.91
Combinations/Pair 1.21
Mean z-score -1.86
Structure conservation index 0.53
SVM decision value 0.09
SVM RNA-class probability 0.577119
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2058333 99 + 20766785
UAGCACCGGCUAUGCCUGAUAACGAGUUCAAUGUGUACAUA--------UGUUUAUAUUCCUGGGCUUUUGGGUGGACCUGGU-GAAGGUAAAAUUAUAUGUUGACUA
...((((((...((((..(....((((((((((((.((...--------.)).)))))...))))))))..))))...)))))-)....................... ( -22.20)
>DroSec_CAF1 43146 108 + 1
UAGCACCGGCGAUGCCUGAUAACGAGUUCAAUGUGUACAUACAAAAAUGUGUAUAUAUUCGUGGGCAUUUAGGUGGACAUGGUUGGAGGUAAAAUUAUAUGUUGACUA
...((((...(((((((....((((.....(((((((((((......))))))))))))))))))))))..))))....((((..(..(((....)))...)..)))) ( -30.40)
>DroSim_CAF1 43867 108 + 1
UAGCACCGGCGAUGCCUGAUAACGAGUUCAAUGUGUACAUACAUACAUGUGUAUAUAUUCGUGGGCAUUUAGGUGGACUUGGUUGGAGGUAAAAUUAUAUGUUGACUA
...((((...(((((((....((((.....(((((((((((......))))))))))))))))))))))..))))....((((..(..(((....)))...)..)))) ( -30.30)
>DroEre_CAF1 42583 94 + 1
UAGCACCAGCGAUGUCUGAUAACGAGUUCAC-AUGUACAUA--------UACGUAU----GUGGGCUUUUGGGUGGACCUGGU-GAAGUUAAUAUAAAAUGUUGGCUA
...((((((....(((((.....((((((((-(((......--------....)))----)))))))).....))))))))))-).(((((((((...))))))))). ( -28.20)
>DroYak_CAF1 45645 89 + 1
UAGCACCAGCGAUGCCUGAUAACGAGUUCAUUAUGUACAUA--------UGUAUAUAUUCGUUGUCUUUUGGGUGGACCUGGA-GAAGUUAAAAUUAA----------
.....((((...(((((((((((((((.....((((((...--------.))))))))))))))))....)))))...)))).-..............---------- ( -23.90)
>consensus
UAGCACCGGCGAUGCCUGAUAACGAGUUCAAUGUGUACAUA________UGUAUAUAUUCGUGGGCUUUUGGGUGGACCUGGU_GAAGGUAAAAUUAUAUGUUGACUA
....(((((...(((((((....(((((((..(((((.((((......)))).)))))...))))))))))))))...)))))......................... (-14.27 = -15.18 +   0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:11 2006