Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,654,544 – 10,654,637 |
Length | 93 |
Max. P | 0.822017 |
Location | 10,654,544 – 10,654,637 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.75 |
Mean single sequence MFE | -41.06 |
Consensus MFE | -25.05 |
Energy contribution | -25.16 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.16 |
Mean z-score | -1.67 |
Structure conservation index | 0.61 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.822017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10654544 93 - 20766785 ACCGGCUGUUG------------CAUAACGCCCACGUGAAGGGGCAAUACCACACCGGCGCCAUCGUCCAUUUUCUCCUGCUUAAGCUGGGCCAGCGGCAUGUCG ..(((((((((------------(.....((((.(.....)))))...........(((.(((.(....................).)))))).)))))).)))) ( -27.75) >DroVir_CAF1 135039 99 - 1 ACCGGCUGUUGAGCGCUGUUCAUGACCGCGCCCACAUGCAGCGGCAGCAC------AGAGCCAUCGUCCAGUUUCUCCUGCUUGAGCUGGGCCAGCGGCAUGUCG ....(((((((.((.((((...((.((((((......)).))))))..))------)).))....((((((((.(........))))))))))))))))...... ( -37.80) >DroPse_CAF1 113199 99 - 1 ACCGGCUGCUGGGCGUUGUUCAUCACAACGCCCACAUGGAGGGGCAGGAC---A---CUGCCAUCGUCCAGCUUCUCCUGCUUGAGCUGGGCCAGCGGCAUCUCG ....(((((((((((((((.....))))))))).....((..(((((...---.---))))).))((((((((.(........))))))))).))))))...... ( -49.30) >DroMoj_CAF1 156253 99 - 1 ACCGGCUGCUGGGCGCUGUUCAUCACGGCGGCCACAUGCAGCGGCAGCAC------UGAGCCAUCGUCCAGCUUCUCCUGCUUCAGCUGGGCGAGCGGCAUGUCC ...((((((((..............))))))))((((((.(((((.....------...))).((((((((((...........)))))))))))).)))))).. ( -46.24) >DroAna_CAF1 122455 87 - 1 ACGGGCUGUUG------------CAUGA------CGUGGAGGGGCAGGACUCCGCCACCGCCAUCGUCCAGCUUCUCCUGCUUGAGCUGGGCCAGCGGCAUGUCG ...((((((((------------(....------.((((.(((((.((...))))).)).)))).((((((((.(........)))))))))..)))))).))). ( -36.80) >DroPer_CAF1 114480 99 - 1 ACCGGCUGCUGGGCGUUGUUCAUCACAACGCCCACAUGGAGGGGCAGGAC---A---CUGCCAUCGUCCAGCUUCUCCUGCUUUAGCUGGGCCAGCGGCAUCUCG ....(((((((((((((((.....))))))))).....((..(((((...---.---))))).))((((((((...........)))))))).))))))...... ( -48.50) >consensus ACCGGCUGCUGGGCG_UGUUCAUCACAACGCCCACAUGGAGGGGCAGGAC___A___CAGCCAUCGUCCAGCUUCUCCUGCUUGAGCUGGGCCAGCGGCAUGUCG ....(((((((...............................(((..............)))...(((((((((.........))))))))))))))))...... (-25.05 = -25.16 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:54 2006