Locus 3113

Sequence ID 2R_DroMel_CAF1
Location 10,650,461 – 10,650,551
Length 90
Max. P 0.978674
window5138

overview

Window 8

Location 10,650,461 – 10,650,551
Length 90
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 84.14
Mean single sequence MFE -26.58
Consensus MFE -17.21
Energy contribution -18.02
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -3.19
Structure conservation index 0.65
SVM decision value 1.82
SVM RNA-class probability 0.978674
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10650461 90 + 20766785
GCCGUCUGUUAUUAGCAAAGCGGAUGUUGUUGUUGCUGGCAGAAGAAGAAGCAGAAACA------GCCACAGCCACAACAAAAAACACAGAAAGGG
.(((((((((........)))))))(((((.((((.((((...................------)))))))).)))))..............)). ( -22.61)
>DroSec_CAF1 84102 87 + 1
GCCGUCUGUUAUUAGCAAAGCGGAUGUUGUUGUUGCUGCUGGCAGCAGAAGCAGAAUCA------GCCACAGCAACA---AAAAAGCAGAAAAGGG
.(((((((((........)))))))(((.(((((((((.((((.((....)).(...).------))))))))))))---)...)))......)). ( -28.50)
>DroSim_CAF1 84850 87 + 1
GCCGUCUGUUAUUAGCAAAGCGGAUGUUGUUGUUGUUGCUGGCAGCAGAAGCAGAAACA------GCCACAGCAACA---AAAAAGCAGAAAAGGG
((((((((((........))))))))((((((((((.((((.(.((....)).)...))------)).)))))))))---)....))......... ( -29.40)
>DroYak_CAF1 92155 93 + 1
GCCGUCUGUUAUUAGCAAAGCGGAUGUUGUUGUUGCUGC---CAGCAAAAGCAGAAACACCAACAGCAACAGCAAAAAAAAAAAAACAGAAAAGGG
.((.((((((....((...)).....((((((((((((.---..((....)).(......)..)))))))))))).........))))))...)). ( -25.80)
>consensus
GCCGUCUGUUAUUAGCAAAGCGGAUGUUGUUGUUGCUGCUGGCAGCAGAAGCAGAAACA______GCCACAGCAACA___AAAAAGCAGAAAAGGG
.(((((((((........)))))))(((((((((((((....)))))...((.............)).)))))))).................)). (-17.21 = -18.02 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:51 2006