| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,647,671 – 10,647,766 |
| Length | 95 |
| Max. P | 0.953639 |
| Location | 10,647,671 – 10,647,766 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 63.92 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -15.02 |
| Energy contribution | -15.66 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10647671 95 - 20766785 ---CGGCGGCGGCAGCUGUUGGCAGGUGCGCGCCCUCAUAAAA-UGGCCAGCUAGCCAGCAAAAAAA-AAAAAAACGAAAAAUAAUAAA-------GUGAAAUACAU ---..(((((((((.(((....))).))).)))).........-((((......)))))).......-.....................-------........... ( -24.40) >DroPse_CAF1 107246 73 - 1 ---CGGUGGCGGCAGCUGUUGGCAGGUGCGCGCCCUCAUAAAA-CGAAUGGCUAACC--CAAAAAAA-AAAAAAACGGC-A-------------------------- ---.((.(((((((.(((....))).))).)))).))......-....(((.....)--))......-...........-.-------------------------- ( -19.40) >DroEre_CAF1 82101 77 - 1 ---CGGCGGCGGCAGCUGUUGGCAGGUGCGCGCCCUCAUAAAA-UGG--------CCAGCAAAAA-----------AAGAAAUAAUAAA-------GUGAAAUACAU ---.((((((((((.(((....))).))).))))..(((...)-)))--------))........-----------.............-------........... ( -21.20) >DroWil_CAF1 120945 87 - 1 ---------UGGCAGCUGAUGGCAGGUGCGCGCCCUCAUAAAAAUGUACGG-----CAUCGAAAGGAG-----AACGAC-AAUGAUGAUGAUGAUUAUGAAGACCAU ---------..(((.(((....))).)))..(((..(((....)))...))-----).((....))..-----......-..(.(((((....))))).)....... ( -15.60) >DroYak_CAF1 89247 95 - 1 CUGCGGCGGCGGCAGCUGUUGGCAGGUGCGCGCCCUCAUAAAA-UGACCAGUUAGCCAGCAAAAAAAA-AA---AGAAGAAAUAAUAAA-------GUGAAAUACAU .(((((((((((((.(((....))).))).)))).((((...)-))).......))).))).......-..---...............-------........... ( -25.00) >consensus ___CGGCGGCGGCAGCUGUUGGCAGGUGCGCGCCCUCAUAAAA_UGAACAG_UA_CCAGCAAAAAAA__AA__AACGACAAAUAAUAAA_______GUGAAAUACAU ....((.(((((((.(((....))).))).)))).))...................................................................... (-15.02 = -15.66 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:50 2006