Locus 3107

Sequence ID 2R_DroMel_CAF1
Location 10,623,822 – 10,623,931
Length 109
Max. P 0.747484
window5127

overview

Window 7

Location 10,623,822 – 10,623,931
Length 109
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 95.50
Mean single sequence MFE -16.87
Consensus MFE -17.42
Energy contribution -16.82
Covariance contribution -0.60
Combinations/Pair 1.18
Mean z-score -1.07
Structure conservation index 1.03
SVM decision value 0.47
SVM RNA-class probability 0.747484
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10623822 109 + 20766785
AACGAGUUUAUUAUACACAG---CGAUCUUCCUUCAUAUUUCUAUGCUUUUUUUGAAUUUGUGUGUGCCCAUCUUAUAUUCAUAUUUAUUGAAUUUACGCUCGACAGCCUCA
..(((((....(((((((((---...((......((((....))))........))..))))))))).......((.(((((.......))))).)).)))))......... ( -15.54)
>DroSec_CAF1 65956 112 + 1
AACGAGUUUAUUAUACACAGCAGUGAUCUUCCUUCAUAUUUCUAUGCUUUUUUUGAAUUUGUGUGUGCCCAUCUUAUAUUCAUAUUUAUUGAAUUUACACUCGACAGCCUCA
..(((((....(((((((((..((((.......))))..(((............))).))))))))).......((.(((((.......))))).)).)))))......... ( -16.60)
>DroSim_CAF1 66971 112 + 1
AACGAGUUUAUUAUACACAGCAGCGAUCUUCCUUCAUAUUUCUAUGCUUUUUUUGAAUUUGUGUGUGCCCAUCUUAUAUUCAUAUUUAUUGAAUUUACGCUCGACAGCCUCA
..(((((....(((((((((...(((........((((....))))......)))...))))))))).......((.(((((.......))))).)).)))))......... ( -17.24)
>DroEre_CAF1 66258 109 + 1
AACGAGCUUAUUAUACACAG---CGAUCUUCCCUCAUAUUUCCAUGCUUUUUUUGAAUUUGUGUGUGCCCAUCUUAUAUUCAUAUUUAUUGAAUUUACGCUCGACAGCCUCA
..(((((....(((((((((---...((......(((......)))........))..))))))))).......((.(((((.......))))).)).)))))......... ( -16.94)
>DroYak_CAF1 73261 109 + 1
AACGAGUUUAUUGCACACAG---CGAUCCUCCUUCAUAUUUCUAUGCUUUUUUUGAAUUUGUGUGUGCCCAUCUUAUAUUCAUAUUUAUUGAAUUUACGCUCGACAGCCUCA
..(((((.....(((((((.---(((......((((.................)))).))))))))))......((.(((((.......))))).)).)))))......... ( -18.03)
>consensus
AACGAGUUUAUUAUACACAG___CGAUCUUCCUUCAUAUUUCUAUGCUUUUUUUGAAUUUGUGUGUGCCCAUCUUAUAUUCAUAUUUAUUGAAUUUACGCUCGACAGCCUCA
..(((((....(((((((((...(((........((((....))))......)))...))))))))).......((.(((((.......))))).)).)))))......... (-17.42 = -16.82 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:41 2006