Locus 3105

Sequence ID 2R_DroMel_CAF1
Location 10,622,079 – 10,622,176
Length 97
Max. P 0.879238
window5124

overview

Window 4

Location 10,622,079 – 10,622,176
Length 97
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 86.28
Mean single sequence MFE -26.20
Consensus MFE -18.60
Energy contribution -18.36
Covariance contribution -0.24
Combinations/Pair 1.21
Mean z-score -2.33
Structure conservation index 0.71
SVM decision value 0.91
SVM RNA-class probability 0.879238
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10622079 97 + 20766785
AUGCCCACAGCCGCAUC------CACAGCCACGCCCACUCACACAAGCGGCUGCCUUACUUCCGGCUGGCAACUUGAAUUACUUAAAGUUUUUCAGUUGGCAA
.((((..((((((....------..(((((.(..............).))))).........))))))..((((.(((..((.....))..))))))))))). ( -27.70)
>DroSec_CAF1 64277 97 + 1
AUGCCCACCGUCGCAUC------CACAGCCACGCCCACCCACACAAGCGGCCGCCUUACUUCCGGCUGGCAACUUGAAUUACUUAAAGUUUUUCAGUUGGCAG
.((((.(((((.((...------....)).)))..........((((..((((((........))).)))..))))...................)).)))). ( -25.30)
>DroSim_CAF1 64852 97 + 1
AUGCCCAAAGUCGCAUC------CACACCCACGCCCACCCACACAAGCGGCCGCCUUCCUUCCGGCUGGCAACUUGAAUUACUUAAAGUUUUUCAGUUGGCAA
.((((....(((((...------.......................))))).(((..((....))..)))((((.(((..((.....))..))))))))))). ( -22.27)
>DroEre_CAF1 64574 97 + 1
AUGCCCACAGCCACGCCCA--CUCACACCGACG----CCCACACAAGCGGGCUCCUUCCUUCCGGCUGGCAACUUGAAUUACUUAAAGUUUUUCGGCUGGCAA
.((((....((((.(((..--........((.(----(((.(....).)))))).........)))))))...(((((..((.....))..)))))..)))). ( -27.41)
>DroYak_CAF1 71496 103 + 1
AUGCCCACAGCUAAAGCUAAAGCUACAGCCACGCCCACCCACACAAGCGGCCGCCUUCCUUCCGGCUGGCAACUUGAAUUACUUAAAGUUUUUCAGUUGGCAA
.((((.((.(((..(((....)))..)))..............((((..((((((........))).)))..))))...................)).)))). ( -28.30)
>consensus
AUGCCCACAGCCGCAUC______CACAGCCACGCCCACCCACACAAGCGGCCGCCUUCCUUCCGGCUGGCAACUUGAAUUACUUAAAGUUUUUCAGUUGGCAA
.((((....((((..............(((.(..............).))).(((........)))))))((((.(((..((.....))..))))))))))). (-18.60 = -18.36 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:38 2006