Locus 3102

Sequence ID 2R_DroMel_CAF1
Location 10,609,503 – 10,609,594
Length 91
Max. P 0.647078
window5119

overview

Window 9

Location 10,609,503 – 10,609,594
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.09
Mean single sequence MFE -35.02
Consensus MFE -18.62
Energy contribution -19.13
Covariance contribution 0.51
Combinations/Pair 1.10
Mean z-score -1.67
Structure conservation index 0.53
SVM decision value 0.24
SVM RNA-class probability 0.647078
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10609503 91 - 20766785
GGCUCGGCUGCCCUUUGAUGCUAAAUGUCGCCAGCAAAUUGUCGCCC-----------------------------CAUGUGGCGCGUUGUUUUCUGCAAUUAAAUGGGCGUGGCACUUA
.(((.(((.((..((((....)))).)).))))))....((((((((-----------------------------(((.......(((((.....)))))...))))).)))))).... ( -25.10)
>DroVir_CAF1 93844 114 - 1
AGUUCGGCUGCUCUUUGAUGCCGAAUGUCGCCAGCA-AUUGUCGCCUGUC---UCCUGGCA--CUGGACGCAUCCACAUGCGGCGUUAUGUUUUAUGCAAUUAAAUGGGCGUGCCAUUUA
.....((((((((((((((((.((((((((((.(((-......(((....---....))).--.((((....))))..)))))))..))))))...)).)))))).))))).)))..... ( -35.30)
>DroPse_CAF1 79460 91 - 1
GGUGCGGCUGCCCUUUGAUGCUGAAUGUCGCCAGCGAAUUGUCGCUC-----------------------------CAUGUGGCAUUAUGUUUUCUGCAAUUAAAUGGGCGUGGCCCUUA
((.((.((.((((((((((((.(((((((((.(((((....))))).-----------------------------...))))))).......)).)).)))))).)))))).))))... ( -33.21)
>DroGri_CAF1 80815 119 - 1
AGUUCGGCCGCCCUUUGAUGCCAAAUGUCGCCAGCAAAUUGUCGCCCGUCUCCUCCUGGCGCACUGGACAU-UUCGCAUGUGGCGUUAUGUUUUGUGCAAUUAAAUGGGCGUGUCUUUUA
.....((((((((((((((..........(((((......(.(....).).....)))))((((..(((((-..(((.....)))..)))))..)))).)))))).))))).)))..... ( -41.90)
>DroMoj_CAF1 107971 118 - 1
AGUUCGGCUGCCCUUUGAUGCCAAAUGUCGCCAGCA-AUUGUCGCCUGUCUUCUCCUGGCACGCUGGACGC-UCUGCAUGUGGCGUUAUGUUUUCUGCAAUUAAAUGGGCGUGCCAUUUC
.....((((((((..((((((((.(((((((((((.-...((.(((...........)))))))))).)).-...)))).))))))))(((.....))).......))))).)))..... ( -41.40)
>DroPer_CAF1 80521 91 - 1
GGUGCGGCUGCCCUUUGAUGCUGAAUGUCGCCAGCGAAUUGUCGCUC-----------------------------CAUGUGGCAUUAUGUUUUCUGCAAUUAAAUGGGCGUGGCCCUUA
((.((.((.((((((((((((.(((((((((.(((((....))))).-----------------------------...))))))).......)).)).)))))).)))))).))))... ( -33.21)
>consensus
AGUUCGGCUGCCCUUUGAUGCCAAAUGUCGCCAGCAAAUUGUCGCCC_____________________________CAUGUGGCGUUAUGUUUUCUGCAAUUAAAUGGGCGUGGCACUUA
.....(.((((((((((((((.(((((((((((((........))..(((.......)))....................)))))..))))))...)).)))))).))))).).)..... (-18.62 = -19.13 +   0.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:34 2006