| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,598,243 – 10,598,345 |
| Length | 102 |
| Max. P | 0.505777 |
| Location | 10,598,243 – 10,598,345 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.37 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -18.01 |
| Energy contribution | -18.40 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10598243 102 + 20766785 G--GCGAU--GGGUUGCUAUCUGUGCGUGCCAAAAAUUUAGCAUU------CUAUGUGCUGAUGCUGGCGCGUGUUAAAAUAAUAAAAUAUGCUACUGCUUGUUCG-UGGUCC (--(((((--((....))))).(..(((((((.....(((((((.------....)))))))...)))))))..)................)))((..(......)-..)).. ( -30.00) >DroVir_CAF1 87402 100 + 1 -------U--GGUCCGCU-CGAGUGCGUGCCAAAAAUUUACCAUUCACCAUCUAUG-GCUGCCUUCUGCGCGUGUUAAAAUAAUAAAAUAUGCUGCUGGCUGUUCUCUG-CU- -------(--((..(((.-.....)))..)))........((((.........)))-)..(((....(((((((((..........))))))).)).))).........-..- ( -23.30) >DroPse_CAF1 75868 106 + 1 GGGGGGAUGGGGGAUGUUGUCUGUGCGUGCCAAAAAUUUAGCAUU------CUAUGUGCUGAUGCUGGCGCGUGCUAAAAUAAUAAAAUAUGCUGGUGUCUGCUCC-UGGUCC ....((((.((((.((((((..(..(((((((.....(((((((.------....)))))))...)))))))..)....))))))......((........)))))-).)))) ( -37.00) >DroEre_CAF1 46409 96 + 1 ----------GGGUUGCUAUCUGUGCGUGCCAAAAAUUUAGCAUU------CUAUGUGCUGAUGCUGGCGCGUGUUAAAAUAAUAAAAUAUGCUGCUGCCUGCUCG-UGGUCC ----------(((..((.....(..(((((((.....(((((((.------....)))))))...)))))))..)...................((.....))..)-)..))) ( -27.30) >DroAna_CAF1 81515 100 + 1 G--CUUGA--AGGUUGU--CCUGUGCGUGCCAAAAAUUUAGCAUU------CUAUGUGCUGAUGCUGGCGCGUGUUAAAAUAAUAAAAUAUGCUGCUGUUUGCCCA-GGAUUC .--.....--.....((--((((.(((.((((.....(((((((.------....)))))))...))))(((((((..........))))))).......))).))-)))).. ( -29.10) >DroPer_CAF1 76897 106 + 1 GGGGGGAAGGGGGAUAUUGUCUGUGCGUGCCAAAAAUUUAGCAUU------CUAUGUGCUGAUGCUGGCGCGUGCUAAAAUAAUAAAAUAUGCUGGUGUCUGCUCC-UGGUCC ...(((..(((((.((((((..(..(((((((.....(((((((.------....)))))))...)))))))..)....))))))......((....))...))))-)..))) ( -34.50) >consensus G__G_GAU__GGGUUGCU_UCUGUGCGUGCCAAAAAUUUAGCAUU______CUAUGUGCUGAUGCUGGCGCGUGUUAAAAUAAUAAAAUAUGCUGCUGUCUGCUCC_UGGUCC ......................(..(((((((.....(((((((...........)))))))...)))))))..)................((........)).......... (-18.01 = -18.40 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:33 2006