Locus 3100

Sequence ID 2R_DroMel_CAF1
Location 10,596,151 – 10,596,244
Length 93
Max. P 0.943697
window5117

overview

Window 7

Location 10,596,151 – 10,596,244
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 91.83
Mean single sequence MFE -21.15
Consensus MFE -18.82
Energy contribution -18.85
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.89
SVM decision value 1.34
SVM RNA-class probability 0.943697
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10596151 93 + 20766785
UCAGCCUGCCACAAGCCAUCAACAGUUUGUUUCAAAUCAGACAACUAUGCCAAGAACAACAACAAUCCCGACGAUGACAUUGUGUGGCACCUG
.(((..(((((((.(.((((....(((((........)))))..((......))..................)))).)....))))))).))) ( -18.70)
>DroPse_CAF1 73975 93 + 1
CCAGCCUGCCACAAGCCAUCAACAGUUUGUUUCAAAUCAGACAACUACUACAAGAAAAGCAACAAUGUCGACGAUGACAUUGUGUGGCACCUG
.(((..((((((..((........(((((........)))))..((......))....)).((((((((......)))))))))))))).))) ( -25.10)
>DroEre_CAF1 44388 93 + 1
UCAGCCUGCCACAAGCCAUCAACAGUUUGUUUCAAAUCAGACAACUACGCCGAGAACAACAACAAUGCCGACGAUGACAUUGUGUGGCACCUG
.(((..((((((............(((((........)))))...................((((((.(......).)))))))))))).))) ( -19.40)
>DroYak_CAF1 51878 93 + 1
UCAGCCUGCCACAAGCCAUCAACAGUUUGUUUCAAAUCAGACAACUACGCCAAGUACAACAACAAUGCCGACGAUGACAUUGUGUGGCACCUG
.(((..(((((((.(.((((....(((((........)))))...(((.....)))................)))).)....))))))).))) ( -20.10)
>DroAna_CAF1 79525 84 + 1
UCAGCCUGCCACAAGCCAUCAACAGUUUGUUUCAAAUCAGGCAACUA---------CAACAACAAUGACGACGAUGACAUUGUGUGGCACCUG
.(((..((((((............(((((........))))).....---------.....((((((.(......).)))))))))))).))) ( -18.50)
>DroPer_CAF1 74993 93 + 1
CCAGCCUGCCACAAGCCAUCAACAGUUUGUUUCAAAUCAGACAACUACUACAAGAAAAGCAACAAUGUCGACGAUGACAUUGUGUGGCACCUG
.(((..((((((..((........(((((........)))))..((......))....)).((((((((......)))))))))))))).))) ( -25.10)
>consensus
UCAGCCUGCCACAAGCCAUCAACAGUUUGUUUCAAAUCAGACAACUACGCCAAGAACAACAACAAUGCCGACGAUGACAUUGUGUGGCACCUG
.(((..((((((............(((((........)))))...................((((((.(......).)))))))))))).))) (-18.82 = -18.85 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:32 2006