Locus 310

Sequence ID 2R_DroMel_CAF1
Location 2,054,394 – 2,054,494
Length 100
Max. P 0.884452
window634

overview

Window 4

Location 2,054,394 – 2,054,494
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.05
Mean single sequence MFE -23.18
Consensus MFE -10.73
Energy contribution -11.57
Covariance contribution 0.84
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.46
SVM decision value 0.93
SVM RNA-class probability 0.884452
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2054394 100 + 20766785
UUUUGGGAUCUGACCCCUUUCUUCUCCUCCCC---------CCACUUCUCCCACACCC-----------ACUUCAUGUCGACAGCAACCGUCUCCGGGCUGUUGCACAUUUACAUGACAC
....((((...((.........))...)))).---------.................-----------...(((((((((((((..(((....)))))))))).......))))))... ( -19.81)
>DroSec_CAF1 39321 93 + 1
UUUUGGGCUCUGACCCCUUCCUUCUCCUCC-C---------CCACUUGUCCC-----------------ACUUCAUGUCGACAGCAACCGUCUCCGGGCUGUUGCACAUUUACAUGACAC
....(((......)))..............-.---------.....((((..-----------------.....(((((((((((..(((....)))))))))).))))......)))). ( -20.82)
>DroSim_CAF1 39932 99 + 1
UUUUGGGCUCUGACCCCUUCCUUCUCCUCC-C---------CCACUUGUCCCACUCCC-----------ACUUCAUGUCGACAGCAACCGUCUCCGGGCUGUUGCACAUUUACAUGACAC
...((((....(((................-.---------......))).....)))-----------)..(((((((((((((..(((....)))))))))).......))))))... ( -19.81)
>DroYak_CAF1 41864 108 + 1
UUUUGGGCUCUGGCCCCUUCCUGCUCCUUC-UCCUUUGCCACCCCCUGACCCACUCCC-----------ACUUCAUGUCGACAGCAAACGUCUCCGGGCUGUUGCACAUUUACAUGACAC
....(((...((((................-......))))..)))............-----------...(((((((((((((...((....)).))))))).......))))))... ( -21.86)
>DroAna_CAF1 40703 103 + 1
CUUUGGCUUGCGGGGUCUUGGAGCGCCACGCC------CCACCAGCUGCCACCCCACA-----------UCUCCACGGCGACAGCCAACGUCUCCAGGCUGUUGCACAUUUACAUGACGC
...((((..(((((((..(((....))).)))------))....)).)))).....((-----------(.......(((((((((..........)))))))))........))).... ( -33.36)
>DroPer_CAF1 50851 96 + 1
--------UC---CCCCAUCC-ACCCAAAC-A---------GCGCC--CUCCACUCCCGCUGGAGGAGGACUUGAUGUCGACAGCAAACGUCUCCAGGCUGUUGCACAUUUACAUGACAC
--------..---.....(((-.((....(-(---------(((..--.........)))))..)).)))...((((((((((((............))))))).))))).......... ( -23.40)
>consensus
UUUUGGGCUCUGACCCCUUCCUUCUCCUCC_C_________CCACCUGUCCCACUCCC___________ACUUCAUGUCGACAGCAAACGUCUCCGGGCUGUUGCACAUUUACAUGACAC
....(((.......))).........................................................(((((((((((...((....)).))))))).))))........... (-10.73 = -11.57 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:08 2006